Difference between revisions of "SJ07914"
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(Created page with "Category:gene == Gene SJ22175 == * transcription-direction: ** positive * right-end-position: ** 113295 * left-end-position: ** 106400 * centisome-position: ** 59.18641...") |
(Created page with "Category:gene == Gene SJ09087 == * transcription-direction: ** positive * right-end-position: ** 341500 * left-end-position: ** 317846 * centisome-position: ** 74.58827...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ09087 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 341500 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 317846 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 74.58827 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
− | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * [[1.14.13.78-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-1121]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12510]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-13492]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-13493]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-13494]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-13506]] |
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-3661]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-5242]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-7580]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-7651]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[TRANS-CINNAMATE-4-MONOOXYGENASE-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[UNSPECIFIC-MONOOXYGENASE-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[PWY- | + | * [[PWY-5047]] |
− | ** ''' | + | ** '''6''' reactions found over '''15''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5034]] |
− | ** ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
− | * [[ | + | * [[PWY-2181]] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-3101]] |
− | ** '''4''' reactions found over ''' | + | ** '''4''' reactions found over '''7''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-7066]] |
− | ** ''' | + | ** '''3''' reactions found over '''12''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5640]] |
− | ** ''' | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5060]] |
− | ** ''' | + | ** '''1''' reactions found over '''6''' reactions in the full pathway |
− | * [[ | + | * [[PWY1F-467]] |
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-1121]] |
− | ** ''' | + | ** '''9''' reactions found over '''19''' reactions in the full pathway |
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=341500}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=317846}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=74.58827 }} |
− | {{#set: organism associated=S. | + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=13}} |
{{#set: nb pathway associated=9}} | {{#set: nb pathway associated=9}} |
Revision as of 14:48, 5 January 2021
Contents
Gene SJ09087
- transcription-direction:
- positive
- right-end-position:
- 341500
- left-end-position:
- 317846
- centisome-position:
- 74.58827
Organism(s) associated with this gene
Reaction(s) associated
- 1.14.13.78-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-1121
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12510
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-13492
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13493
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13494
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13506
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-3661
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-5242
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7580
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7651
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- TRANS-CINNAMATE-4-MONOOXYGENASE-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- UNSPECIFIC-MONOOXYGENASE-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-5047
- 6 reactions found over 15 reactions in the full pathway
- PWY-5034
- 6 reactions found over 6 reactions in the full pathway
- PWY-2181
- 3 reactions found over 4 reactions in the full pathway
- PWY-3101
- 4 reactions found over 7 reactions in the full pathway
- PWY-7066
- 3 reactions found over 12 reactions in the full pathway
- PWY-5640
- 1 reactions found over 1 reactions in the full pathway
- PWY-5060
- 1 reactions found over 6 reactions in the full pathway
- PWY1F-467
- 1 reactions found over 2 reactions in the full pathway
- PWY-1121
- 9 reactions found over 19 reactions in the full pathway