Difference between revisions of "SJ00636"
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(Created page with "Category:gene == Gene SJ10107 == * transcription-direction: ** positive * right-end-position: ** 184570 * left-end-position: ** 161730 * centisome-position: ** 40.618225...") |
(Created page with "Category:gene == Gene SJ11017 == * transcription-direction: ** positive * right-end-position: ** 1367450 * left-end-position: ** 1358538 * centisome-position: ** 94.050385...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ11017 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 1367450 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 1358538 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 94.050385 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[S. | + | * [[S.japonica_carotenoid_curated]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[1.2.1.25-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[1.2.4.4-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[2.3.1.168-RXN]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[2KETO-3METHYLVALERATE-RXN]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[KETOISOCAPROATE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN | + | * [[METHYLVALERATE-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-7719]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-7790]] |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
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</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[VALDEG-PWY]] | |
− | + | ** '''6''' reactions found over '''8''' reactions in the full pathway | |
− | + | * [[PWY-5046]] | |
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− | * [[ | ||
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− | ** '''6''' reactions found over | ||
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− | * [[PWY- | ||
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** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
− | * [[ | + | * [[PWY-5108]] |
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** '''2''' reactions found over '''3''' reactions in the full pathway | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
− | * [[ | + | * [[ILEUDEG-PWY]] |
− | ** ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5130]] |
− | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''1''' reactions in the full pathway |
− | * [[PWY66- | + | * [[PWY66-428]] |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
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{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=1367450}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=1358538}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=94.050385 }} |
− | {{#set: organism associated=S. | + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 14:49, 5 January 2021
Contents
Gene SJ11017
- transcription-direction:
- positive
- right-end-position:
- 1367450
- left-end-position:
- 1358538
- centisome-position:
- 94.050385
Organism(s) associated with this gene
Reaction(s) associated
- 1.2.1.25-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 1.2.4.4-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 2.3.1.168-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 2KETO-3METHYLVALERATE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- KETOISOCAPROATE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- METHYLVALERATE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7719
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7790
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-5046
- 3 reactions found over 3 reactions in the full pathway
- PWY-5108
- 2 reactions found over 3 reactions in the full pathway
- ILEUDEG-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-5130
- 2 reactions found over 1 reactions in the full pathway
- PWY66-428
- 2 reactions found over 2 reactions in the full pathway