Difference between revisions of "SJ11782"

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(Created page with "Category:gene == Gene SJ03269 == * transcription-direction: ** positive * right-end-position: ** 51052 * left-end-position: ** 38904 * centisome-position: ** 31.612307...")
(Created page with "Category:gene == Gene SJ19404 == * transcription-direction: ** negative * right-end-position: ** 545830 * left-end-position: ** 517973 * centisome-position: ** 81.70269...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03269 ==
+
== Gene SJ19404 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 51052
+
** 545830
 
* left-end-position:
 
* left-end-position:
−
** 38904
+
** 517973
 
* centisome-position:
 
* centisome-position:
−
** 31.612307    
+
** 81.70269    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[2.4.1.119-RXN]]
−
* [[RXN-8988]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCCOASYN-RXN]]
+
* [[RXN-16761]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SUCL_LPAREN_gdp_RPAREN_m]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]]
−
* [[PWY-5749]]
+
** '''16''' reactions found over '''19''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[P42-PWY]]
+
{{#set: right-end-position=545830}}
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
{{#set: left-end-position=517973}}
−
* [[PWY-5392]]
+
{{#set: centisome-position=81.70269   }}
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY-5690]]
+
{{#set: nb reaction associated=2}}
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
{{#set: nb pathway associated=1}}
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5538]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5537]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TCA]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7384]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=51052}}
 
−
{{#set: left-end-position=38904}}
 
−
{{#set: centisome-position=31.612307   }}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=4}}
 
−
{{#set: nb pathway associated=13}}
 

Revision as of 14:53, 5 January 2021

Gene SJ19404

  • transcription-direction:
    • negative
  • right-end-position:
    • 545830
  • left-end-position:
    • 517973
  • centisome-position:
    • 81.70269

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




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