Difference between revisions of "RXN-8999"
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(Created page with "Category:reaction == Reaction ACACT4 == * direction: ** reversible * common-name: ** octanoyl-coa:acetyl-coa c-acyltransferase == Reaction formula == * 1.0 CO-A[x] '''...") |
(Created page with "Category:reaction == Reaction PORPHOBILSYNTH-RXN == * direction: ** left-to-right * common-name: ** porphobilinogen synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction PORPHOBILSYNTH-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** porphobilinogen synthase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.2.1.24 ec-4.2.1.24] | ||
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 2 [[5-AMINO-LEVULINATE]][c] '''=>''' 1 [[PORPHOBILINOGEN]][c] '''+''' 1 [[PROTON]][c] '''+''' 2 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ07541]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ07531]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24064 24064] |
− | {{#set: nb pathway associated= | + | * LIGAND-RXN: |
− | {{#set: reconstruction category=orthology}} | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00036 R00036] |
− | {{#set: reconstruction tool=pantograph}} | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/P06214 P06214] | ||
+ | ** [http://www.uniprot.org/uniprot/P13716 P13716] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M315 Q7M315] | ||
+ | ** [http://www.uniprot.org/uniprot/P30124 P30124] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JV37 Q9JV37] | ||
+ | ** [http://www.uniprot.org/uniprot/P30950 P30950] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60178 Q60178] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNU5 Q9PNU5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59295 Q59295] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02250 Q02250] | ||
+ | ** [http://www.uniprot.org/uniprot/P10518 P10518] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43148 Q43148] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42682 Q42682] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43058 Q43058] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59643 Q59643] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S8B1 Q9S8B1] | ||
+ | ** [http://www.uniprot.org/uniprot/P05373 P05373] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ACB2 P0ACB2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42836 Q42836] | ||
+ | ** [http://www.uniprot.org/uniprot/P43210 P43210] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZNC9 Q9ZNC9] | ||
+ | </div> | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=porphobilinogen synthase}} | ||
+ | {{#set: ec-number=ec-4.2.1.24}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=2}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:02, 5 January 2021
Contents
Reaction PORPHOBILSYNTH-RXN
- direction:
- left-to-right
- common-name:
- porphobilinogen synthase
- ec-number:
Reaction formula
- 2 5-AMINO-LEVULINATE[c] => 1 PORPHOBILINOGEN[c] + 1 PROTON[c] + 2 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ07541
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ07531
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
- 6 reactions found over 6 reactions in the full pathway
- PWY-5189, tetrapyrrole biosynthesis II (from glycine):
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links