Difference between revisions of "ATP-PYROPHOSPHATASE-RXN"
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(Created page with "Category:reaction == Reaction PRIBFAICARPISOM-RXN == * direction: ** left-to-right * common-name: ** n-(5'-phospho-l-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imi...") |
(Created page with "Category:reaction == Reaction OHMETHYLBILANESYN-RXN == * direction: ** left-to-right * common-name: ** hydroxymethylbilane synthase * ec-number: ** [http://enzyme.expasy.o...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction OHMETHYLBILANESYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** hydroxymethylbilane synthase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/5 | + | ** [http://enzyme.expasy.org/EC/2.5.1.61 ec-2.5.1.61] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ02237]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
Line 17: | Line 17: | ||
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q57989 Q57989] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O29026 O29026] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P64336 P64336] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P28464 P28464] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P56140 P56140] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O26960 O26960] |
+ | ** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77] | ||
+ | ** [http://www.uniprot.org/uniprot/P06983 P06983] | ||
+ | ** [http://www.uniprot.org/uniprot/P13446 P13446] | ||
+ | ** [http://www.uniprot.org/uniprot/P08397 P08397] | ||
+ | ** [http://www.uniprot.org/uniprot/P22907 P22907] | ||
+ | ** [http://www.uniprot.org/uniprot/P19356 P19356] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43082 Q43082] | ||
+ | ** [http://www.uniprot.org/uniprot/P40129 P40129] | ||
+ | ** [http://www.uniprot.org/uniprot/P30527 P30527] | ||
+ | ** [http://www.uniprot.org/uniprot/P28789 P28789] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60169 Q60169] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43316 Q43316] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49808 Q49808] | ||
+ | ** [http://www.uniprot.org/uniprot/P73660 P73660] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09899 Q09899] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=hydroxymethylbilane synthase}} |
− | {{#set: ec-number=ec-5 | + | {{#set: ec-number=ec-2.5.1.61}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:33, 5 January 2021
Contents
Reaction OHMETHYLBILANESYN-RXN
- direction:
- left-to-right
- common-name:
- hydroxymethylbilane synthase
- ec-number:
Reaction formula
- 4 PORPHOBILINOGEN[c] + 1 WATER[c] => 4 AMMONIUM[c] + 1 HYDROXYMETHYLBILANE[c]
Gene(s) associated with this reaction
- Gene: SJ02237
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5189, tetrapyrrole biosynthesis II (from glycine):
- 3 reactions found over 4 reactions in the full pathway
- PWY-5188, tetrapyrrole biosynthesis I (from glutamate):
- 6 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links