Difference between revisions of "TRIMETHYLLYSINE-DIOXYGENASE-RXN"
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(Created page with "Category:reaction == Reaction RXN-17105 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19] == Reaction formula == * 1 CPD-...") |
(Created page with "Category:reaction == Reaction CYSTEINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** cysteine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction CYSTEINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** cysteine-trna ligase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[SJ19796]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ09098]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12227]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21439]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY | + | * [[TRNA-CHARGING-PWY]], tRNA charging: |
− | ** ''' | + | ** '''21''' reactions found over '''21''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06752 Q06752] | ||
+ | ** [http://www.uniprot.org/uniprot/P43816 P43816] | ||
+ | ** [http://www.uniprot.org/uniprot/O29836 O29836] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0] | ||
+ | ** [http://www.uniprot.org/uniprot/O58370 O58370] | ||
+ | ** [http://www.uniprot.org/uniprot/O83129 O83129] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8] | ||
+ | ** [http://www.uniprot.org/uniprot/P41259 P41259] | ||
+ | ** [http://www.uniprot.org/uniprot/O51545 O51545] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4] | ||
+ | ** [http://www.uniprot.org/uniprot/O67163 O67163] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3] | ||
+ | ** [http://www.uniprot.org/uniprot/P47495 P47495] | ||
+ | ** [http://www.uniprot.org/uniprot/P75423 P75423] | ||
+ | ** [http://www.uniprot.org/uniprot/P74330 P74330] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2] | ||
+ | ** [http://www.uniprot.org/uniprot/P21888 P21888] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: ec-number=ec-1. | + | {{#set: common-name=cysteine-trna ligase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.1.1.16}} |
+ | {{#set: nb gene associated=4}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
− | {{#set: reconstruction category= | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction comment=n.a}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:35, 5 January 2021
Contents
Reaction CYSTEINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- cysteine-trna ligase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ19796
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09098
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12227
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21439
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links