Difference between revisions of "SJ17269"
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(Created page with "Category:gene == Gene SJ11297 == * transcription-direction: ** negative * right-end-position: ** 440735 * left-end-position: ** 430484 * centisome-position: ** 54.939716...") |
(Created page with "Category:gene == Gene SJ13098 == * transcription-direction: ** negative * right-end-position: ** 30548 * left-end-position: ** 12458 * centisome-position: ** 3.60364 =...") |
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Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ13098 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 30548 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 12458 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 3.60364 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[RXN-11519]] |
− | ** Category: [[ | + | ** Category: [[orthology]] |
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
+ | * [[RXN-11520]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
− | * [[RXN- | + | * [[RXN-11521]] |
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
− | + | * [[RXN-12615]] | |
− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-7682]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN0-901]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[XANDH]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[XANTHINE-OXIDASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[XNDH]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[PWY- | + | * [[PWY-6632]] |
− | ** ''' | + | ** '''4''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY | + | * [[P164-PWY]] |
− | ** ''' | + | ** '''6''' reactions found over '''17''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6596]] |
− | ** ''' | + | ** '''7''' reactions found over '''8''' reactions in the full pathway |
− | * [[PWY | + | * [[SALVADEHYPOX-PWY]] |
− | ** ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-5497]] |
− | ** ''' | + | ** '''10''' reactions found over '''24''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6606]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6607]] |
− | ** '''3''' reactions found over ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6999]] |
− | ** ''' | + | ** '''2''' reactions found over '''9''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6608]] |
− | ** ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6538]] |
− | ** ''' | + | ** '''2''' reactions found over '''7''' reactions in the full pathway |
− | * [[ | + | * [[PWY-5695]] |
− | ** '''4''' reactions found over ''' | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
</div> | </div> | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
− | {{#set: right-end-position= | + | {{#set: right-end-position=30548}} |
− | {{#set: left-end-position= | + | {{#set: left-end-position=12458}} |
− | {{#set: centisome-position= | + | {{#set: centisome-position=3.60364 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=9}} |
{{#set: nb pathway associated=11}} | {{#set: nb pathway associated=11}} |
Revision as of 13:03, 14 January 2021
Contents
Gene SJ13098
- transcription-direction:
- negative
- right-end-position:
- 30548
- left-end-position:
- 12458
- centisome-position:
- 3.60364
Organism(s) associated with this gene
Reaction(s) associated
- RXN-11519
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11520
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-11521
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12615
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7682
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-901
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: annotation
- XANDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- XANTHINE-OXIDASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- Category: annotation
- XNDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6632
- 4 reactions found over 3 reactions in the full pathway
- P164-PWY
- 6 reactions found over 17 reactions in the full pathway
- PWY-6596
- 7 reactions found over 8 reactions in the full pathway
- SALVADEHYPOX-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-5497
- 10 reactions found over 24 reactions in the full pathway
- PWY-6606
- 4 reactions found over 4 reactions in the full pathway
- PWY-6607
- 3 reactions found over 4 reactions in the full pathway
- PWY-6999
- 2 reactions found over 9 reactions in the full pathway
- PWY-6608
- 4 reactions found over 4 reactions in the full pathway
- PWY-6538
- 2 reactions found over 7 reactions in the full pathway
- PWY-5695
- 4 reactions found over 4 reactions in the full pathway