Difference between revisions of "SJ15786"

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(Created page with "Category:gene == Gene SJ00005 == * transcription-direction: ** negative * right-end-position: ** 172110 * left-end-position: ** 158699 * centisome-position: ** 10.802795...")
(Created page with "Category:gene == Gene SJ09884 == * transcription-direction: ** positive * right-end-position: ** 22689 * left-end-position: ** 18800 * centisome-position: ** 52.647793...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00005 ==
+
== Gene SJ09884 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 172110
+
** 22689
 
* left-end-position:
 
* left-end-position:
−
** 158699
+
** 18800
 
* centisome-position:
 
* centisome-position:
−
** 10.802795    
+
** 52.647793    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ACETYLORNDEACET-RXN]]
−
* [[2.3.1.179-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[AMINOACYLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.3.1.41-RXN]]
+
* [[RXN-13684]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[3-OXOACYL-ACP-SYNTH-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10059]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10654]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10658]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11474]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11479]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16615]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16621]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16625]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16629]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-8391]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9516]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9523]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9527]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9531]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9535]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9539]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9632]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9648]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9650]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9651]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9652]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9653]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9654]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN0-2141]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-368]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-445]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-460]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN1G-499]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN3O-1803]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GLUTORN-PWY]]
−
* [[PWY-5973]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5966]]
 
−
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-5965]]
 
−
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[FASYN-INITIAL-PWY]]
 
−
** '''5''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7388]]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[FASYN-ELONG-PWY]]
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6113]]
+
{{#set: transcription-direction=positive}}
−
** '''8''' reactions found over '''4''' reactions in the full pathway
+
{{#set: right-end-position=22689}}
−
* [[PWYG-321]]
+
{{#set: left-end-position=18800}}
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
{{#set: centisome-position=52.647793   }}
−
* [[PWY-6282]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6519]]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7664]]
 
−
** '''13''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-7663]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5367]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5971]]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5989]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5994]]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY0-862]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7858]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY3O-355]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=172110}}
 
−
{{#set: left-end-position=158699}}
 
−
{{#set: centisome-position=10.802795   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=33}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=1}}

Revision as of 13:04, 14 January 2021

Gene SJ09884

  • transcription-direction:
    • positive
  • right-end-position:
    • 22689
  • left-end-position:
    • 18800
  • centisome-position:
    • 52.647793

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLUTORN-PWY
    • 5 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ15786&oldid=83288"