Difference between revisions of "RXN-16095"

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(Created page with "Category:reaction == Reaction HEMN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.98.3 ec-1.3.98.3] == Reaction formula == * 1 COP...")
(Created page with "Category:reaction == Reaction ExchangeSeed-THIAMINE == * direction: ** reversible == Reaction formula == * 1.0 THIAMINE[C-BOUNDARY] '''<=>''' 1.0 THIAMINE[e] == Ge...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction HEMN-RXN ==
+
== Reaction ExchangeSeed-THIAMINE ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* ec-number:
 
** [http://enzyme.expasy.org/EC/1.3.98.3 ec-1.3.98.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
* 1.0 [[THIAMINE]][C-BOUNDARY] '''<=>''' 1.0 [[THIAMINE]][e]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ05457]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ16512]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ06609]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03663]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ20556]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 
** '''4''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15426 15426]
+
{{#set: nb gene associated=0}}
* LIGAND-RXN:
+
{{#set: nb pathway associated=0}}
** [http://www.genome.jp/dbget-bin/www_bget?R06895 R06895]
+
{{#set: reconstruction category=manual}}
{{#set: direction=left-to-right}}
+
{{#set: reconstruction tool=curation}}
{{#set: ec-number=ec-1.3.98.3}}
+
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
{{#set: nb gene associated=5}}
+
{{#set: reconstruction source=import_from_medium}}
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 13:14, 14 January 2021

Reaction ExchangeSeed-THIAMINE

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links