Difference between revisions of "AUPT"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-9615 == * direction: ** left-to-right == Reaction formula == * 1 AMMONIUM[e] '''=>''' 1 AMMONIUM[c] == Gene(s) associated with th...") |
(Created page with "Category:reaction == Reaction LIPOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** linoleate 13s-lipoxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction LIPOXYGENASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** linoleate 13s-lipoxygenase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/1.13.11.12 ec-1.13.11.12] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[LINOLEIC_ACID]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[13-HYDROPEROXYOCTADECA-911-DIENOATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ16632]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ03316]] |
− | ** Category: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
+ | * Gene: [[SJ08291]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ16633]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ12567]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5410]], traumatin and (Z)-3-hexen-1-yl acetate biosynthesis: | ||
+ | ** '''2''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5409]], divinyl ether biosynthesis II: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22781 22781] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03626 R03626] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P09439 P09439] | ||
+ | ** [http://www.uniprot.org/uniprot/P08170 P08170] | ||
+ | ** [http://www.uniprot.org/uniprot/Q06327 Q06327] | ||
+ | ** [http://www.uniprot.org/uniprot/P38418 P38418] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S8X5 Q9S8X5] | ||
+ | ** [http://www.uniprot.org/uniprot/P09918 P09918] | ||
+ | ** [http://www.uniprot.org/uniprot/P14856 P14856] | ||
+ | ** [http://www.uniprot.org/uniprot/P24095 P24095] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41244 Q41244] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41245 Q41245] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S9D8 Q9S9D8] | ||
+ | ** [http://www.uniprot.org/uniprot/P27481 P27481] | ||
+ | ** [http://www.uniprot.org/uniprot/P27480 P27480] | ||
+ | ** [http://www.uniprot.org/uniprot/P29250 P29250] | ||
+ | ** [http://www.uniprot.org/uniprot/P37831 P37831] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43817 Q43817] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43800 Q43800] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42710 Q42710] | ||
+ | ** [http://www.uniprot.org/uniprot/P29114 P29114] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42846 Q42846] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42847 Q42847] | ||
+ | ** [http://www.uniprot.org/uniprot/P93184 P93184] | ||
+ | ** [http://www.uniprot.org/uniprot/P93190 P93190] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41520 Q41520] | ||
+ | ** [http://www.uniprot.org/uniprot/P38416 P38416] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42873 Q42873] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43438 Q43438] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43440 Q43440] | ||
+ | ** [http://www.uniprot.org/uniprot/O24295 O24295] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42780 Q42780] | ||
+ | ** [http://www.uniprot.org/uniprot/O24470 O24470] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43501 Q43501] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43446 Q43446] | ||
+ | ** [http://www.uniprot.org/uniprot/O49878 O49878] | ||
+ | ** [http://www.uniprot.org/uniprot/O49880 O49880] | ||
+ | ** [http://www.uniprot.org/uniprot/O24370 O24370] | ||
+ | ** [http://www.uniprot.org/uniprot/O24371 O24371] | ||
+ | ** [http://www.uniprot.org/uniprot/Q41430 Q41430] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96573 Q96573] | ||
+ | ** [http://www.uniprot.org/uniprot/Q96574 Q96574] | ||
+ | ** [http://www.uniprot.org/uniprot/P38417 P38417] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39874 Q39874] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39875 Q39875] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43191 Q43191] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39611 Q39611] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42705 Q42705] | ||
+ | ** [http://www.uniprot.org/uniprot/P93698 P93698] | ||
+ | ** [http://www.uniprot.org/uniprot/O24320 O24320] | ||
+ | ** [http://www.uniprot.org/uniprot/O04919 O04919] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=linoleate 13s-lipoxygenase}} |
− | {{#set: nb pathway associated= | + | {{#set: ec-number=ec-1.13.11.12}} |
− | {{#set: reconstruction category= | + | {{#set: nb gene associated=5}} |
− | {{#set: reconstruction tool= | + | {{#set: nb pathway associated=2}} |
+ | {{#set: reconstruction category=annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 13:14, 14 January 2021
Contents
Reaction LIPOXYGENASE-RXN
- direction:
- left-to-right
- common-name:
- linoleate 13s-lipoxygenase
- ec-number:
Reaction formula
- 1 LINOLEIC_ACID[c] + 1 OXYGEN-MOLECULE[c] => 1 13-HYDROPEROXYOCTADECA-911-DIENOATE[c]
Gene(s) associated with this reaction
- Gene: SJ16632
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03316
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ08291
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ16633
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ12567
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5410, traumatin and (Z)-3-hexen-1-yl acetate biosynthesis:
- 2 reactions found over 9 reactions in the full pathway
- PWY-5409, divinyl ether biosynthesis II:
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P09439
- P08170
- Q06327
- P38418
- Q9S8X5
- P09918
- P14856
- P24095
- Q41244
- Q41245
- Q9S9D8
- P27481
- P27480
- P29250
- P37831
- Q43817
- Q43800
- Q42710
- P29114
- Q42846
- Q42847
- P93184
- P93190
- Q41520
- P38416
- Q42873
- Q43438
- Q43440
- O24295
- Q42780
- O24470
- Q43501
- Q43446
- O49878
- O49880
- O24370
- O24371
- Q41430
- Q96573
- Q96574
- P38417
- Q39874
- Q39875
- Q43191
- Q39611
- Q42705
- P93698
- O24320
- O04919