Difference between revisions of "XPPRT"

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(Created page with "Category:reaction == Reaction ARGININE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** arginine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction RXN-9680 == * direction: ** left-to-right * common-name: ** dimethylglycine-betaine methyltransferase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ARGININE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-9680 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** arginine-trna ligase
+
** dimethylglycine-betaine methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.19 ec-6.1.1.19]
+
** [http://enzyme.expasy.org/EC/2.1.1.161 ec-2.1.1.161]
 +
* synonymous:
 +
** sarcosine dimethylglycine n-methyltransferase
 +
** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
 +
** gsdmt
 +
** apdmt
 +
** glycine sarcosine dimethylglycine n-methyltransferase
 +
** sdmt
 +
** sarcosine-dimethylglycine methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ARG]][c] '''+''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11647]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12128]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12119]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05085]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ11087]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13753]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14716]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18177]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12116]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03081]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02539]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02540]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20302 20302]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10073 10073]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03646 R03646]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07244 R07244]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P40329 P40329]
 
−
** [http://www.uniprot.org/uniprot/P35868 P35868]
 
−
** [http://www.uniprot.org/uniprot/P43832 P43832]
 
−
** [http://www.uniprot.org/uniprot/O51540 O51540]
 
−
** [http://www.uniprot.org/uniprot/O67068 O67068]
 
−
** [http://www.uniprot.org/uniprot/O59147 O59147]
 
−
** [http://www.uniprot.org/uniprot/O83803 O83803]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE81 Q9ZE81]
 
−
** [http://www.uniprot.org/uniprot/Q9PNC0 Q9PNC0]
 
−
** [http://www.uniprot.org/uniprot/Q9X0H8 Q9X0H8]
 
−
** [http://www.uniprot.org/uniprot/P46906 P46906]
 
−
** [http://www.uniprot.org/uniprot/Q57689 Q57689]
 
−
** [http://www.uniprot.org/uniprot/O27496 O27496]
 
−
** [http://www.uniprot.org/uniprot/Q9JTM7 Q9JTM7]
 
−
** [http://www.uniprot.org/uniprot/Q9CE12 Q9CE12]
 
−
** [http://www.uniprot.org/uniprot/P56128 P56128]
 
−
** [http://www.uniprot.org/uniprot/P47618 P47618]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMB9 Q9ZMB9]
 
−
** [http://www.uniprot.org/uniprot/Q08888 Q08888]
 
−
** [http://www.uniprot.org/uniprot/P54136 P54136]
 
−
** [http://www.uniprot.org/uniprot/P38714 P38714]
 
−
** [http://www.uniprot.org/uniprot/Q05506 Q05506]
 
−
** [http://www.uniprot.org/uniprot/P75222 P75222]
 
−
** [http://www.uniprot.org/uniprot/P11875 P11875]
 
−
** [http://www.uniprot.org/uniprot/O23247 O23247]
 
−
** [http://www.uniprot.org/uniprot/O74781 O74781]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=arginine-trna ligase}}
+
{{#set: common-name=dimethylglycine-betaine methyltransferase}}
−
{{#set: ec-number=ec-6.1.1.19}}
+
{{#set: ec-number=ec-2.1.1.161}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=sarcosine-dimethylglycine methyltransferase|gsdmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|sarcosine dimethylglycine n-methyltransferase|sdmt|apdmt}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:14, 14 January 2021

Reaction RXN-9680

  • direction:
    • left-to-right
  • common-name:
    • dimethylglycine-betaine methyltransferase
  • ec-number:
  • synonymous:
    • sarcosine dimethylglycine n-methyltransferase
    • s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
    • gsdmt
    • apdmt
    • glycine sarcosine dimethylglycine n-methyltransferase
    • sdmt
    • sarcosine-dimethylglycine methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P541-PWY, glycine betaine biosynthesis IV (from glycine):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6004, glycine betaine biosynthesis V (from glycine):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=XPPRT&oldid=88279"