Difference between revisions of "DCYSDESULF-RXN"
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(Created page with "Category:reaction == Reaction RXN-12507 == * direction: ** left-to-right == Reaction formula == * 1 CPD0-2171[c] '''+''' 1 NAD[c] '''=>''' 1 CPD-10284[c] '''+'...") |
(Created page with "Category:reaction == Reaction ACETYL-COA-ACETYLTRANSFER-RXN == * direction: ** reversible * common-name: ** acetyl-coa acetyltransferase * ec-number: ** [http://enzyme.exp...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ACETYL-COA-ACETYLTRANSFER-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** acetyl-coa acetyltransferase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.1.9 ec-2.3.1.9] | ||
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 2 [[ACETYL-COA]][c] '''<=>''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[CO-A]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ09371]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ14898]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | *** Source: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | * Gene: [[ | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ21818]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''5''' reactions found over '''11''' reactions in the full pathway | + | * [[PWY-6174]], mevalonate pathway II (archaea): |
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6883]], pyruvate fermentation to butanol II (engineered): | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6876]], isopropanol biosynthesis (engineered): | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[ACETOACETATE-DEG-PWY]], acetoacetate degradation (to acetyl CoA): | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5177]], glutaryl-CoA degradation: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6588]], pyruvate fermentation to acetone: | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-922]], mevalonate pathway I: | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-6583]], pyruvate fermentation to butanol I: | ||
+ | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: | ||
+ | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY1-3]], polyhydroxybutanoate biosynthesis: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): | ||
+ | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): | ||
+ | ** '''6''' reactions found over '''15''' reactions in the full pathway | ||
+ | * [[PWY-7391]], isoprene biosynthesis II (engineered): | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): | ||
+ | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-5741]], ethylmalonyl-CoA pathway: | ||
+ | ** '''2''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-6863]], pyruvate fermentation to hexanol (engineered): | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P163-PWY]], L-lysine fermentation to acetate and butanoate: | ||
+ | ** '''3''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7779]], methyl tert-butyl ether degradation: | ||
+ | ** '''2''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7778]], 2-methylpropene degradation: | ||
+ | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-7524]], mevalonate pathway III (archaea): | ||
+ | ** '''5''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY66-368]], ketolysis: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY66-367]], ketogenesis: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5676]], acetyl-CoA fermentation to butanoate II: | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[CENTFERM-PWY]], pyruvate fermentation to butanoate: | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21039 21039] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00238 R00238] |
− | {{#set: direction= | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/Q8CAY6 Q8CAY6] | ||
+ | ** [http://www.uniprot.org/uniprot/P41338 P41338] | ||
+ | ** [http://www.uniprot.org/uniprot/P45362 P45362] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9BWD1 Q9BWD1] | ||
+ | ** [http://www.uniprot.org/uniprot/P45359 P45359] | ||
+ | ** [http://www.uniprot.org/uniprot/P24752 P24752] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12598 Q12598] | ||
+ | ** [http://www.uniprot.org/uniprot/P45369 P45369] | ||
+ | ** [http://www.uniprot.org/uniprot/P46707 P46707] | ||
+ | ** [http://www.uniprot.org/uniprot/P73825 P73825] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43637 Q43637] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UQW6 Q9UQW6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z3Y4 Q9Z3Y4] | ||
+ | ** [http://www.uniprot.org/uniprot/P77852 P77852] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9XD81 Q9XD81] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZGI9 Q9ZGI9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9L8E0 Q9L8E0] | ||
+ | ** [http://www.uniprot.org/uniprot/P14611 P14611] | ||
+ | ** [http://www.uniprot.org/uniprot/P07097 P07097] | ||
+ | ** [http://www.uniprot.org/uniprot/P17764 P17764] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=acetyl-coa acetyltransferase}} | ||
+ | {{#set: ec-number=ec-2.3.1.9}} | ||
{{#set: nb gene associated=3}} | {{#set: nb gene associated=3}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=24}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:14, 14 January 2021
Contents
Reaction ACETYL-COA-ACETYLTRANSFER-RXN
- direction:
- reversible
- common-name:
- acetyl-coa acetyltransferase
- ec-number:
Reaction formula
- 2 ACETYL-COA[c] <=> 1 ACETOACETYL-COA[c] + 1 CO-A[c]
Gene(s) associated with this reaction
- Gene: SJ09371
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ14898
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ21818
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6174, mevalonate pathway II (archaea):
- 6 reactions found over 7 reactions in the full pathway
- PWY-6883, pyruvate fermentation to butanol II (engineered):
- 5 reactions found over 6 reactions in the full pathway
- PWY-6876, isopropanol biosynthesis (engineered):
- 2 reactions found over 5 reactions in the full pathway
- ACETOACETATE-DEG-PWY, acetoacetate degradation (to acetyl CoA):
- 1 reactions found over 2 reactions in the full pathway
- PWY-5177, glutaryl-CoA degradation:
- 5 reactions found over 5 reactions in the full pathway
- PWY-6588, pyruvate fermentation to acetone:
- 2 reactions found over 5 reactions in the full pathway
- PWY-922, mevalonate pathway I:
- 7 reactions found over 7 reactions in the full pathway
- PWY-6583, pyruvate fermentation to butanol I:
- 6 reactions found over 8 reactions in the full pathway
- PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
- 8 reactions found over 18 reactions in the full pathway
- PWY1-3, polyhydroxybutanoate biosynthesis:
- 2 reactions found over 3 reactions in the full pathway
- PWY-7216, (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered):
- 3 reactions found over 5 reactions in the full pathway
- PWY-7401, crotonate fermentation (to acetate and cyclohexane carboxylate):
- 6 reactions found over 15 reactions in the full pathway
- PWY-7391, isoprene biosynthesis II (engineered):
- 7 reactions found over 8 reactions in the full pathway
- P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
- 7 reactions found over 11 reactions in the full pathway
- PWY-5741, ethylmalonyl-CoA pathway:
- 2 reactions found over 11 reactions in the full pathway
- PWY-6863, pyruvate fermentation to hexanol (engineered):
- 9 reactions found over 11 reactions in the full pathway
- P163-PWY, L-lysine fermentation to acetate and butanoate:
- 3 reactions found over 10 reactions in the full pathway
- PWY-7779, methyl tert-butyl ether degradation:
- 2 reactions found over 10 reactions in the full pathway
- PWY-7778, 2-methylpropene degradation:
- 3 reactions found over 8 reactions in the full pathway
- PWY-7524, mevalonate pathway III (archaea):
- 5 reactions found over 8 reactions in the full pathway
- PWY66-368, ketolysis:
- 2 reactions found over 3 reactions in the full pathway
- PWY66-367, ketogenesis:
- 4 reactions found over 5 reactions in the full pathway
- PWY-5676, acetyl-CoA fermentation to butanoate II:
- 4 reactions found over 5 reactions in the full pathway
- CENTFERM-PWY, pyruvate fermentation to butanoate:
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links