Difference between revisions of "MBCOA-DHLIPOAMIDE-RXN"
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(Created page with "Category:reaction == Reaction PDHam2hi == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (lipoamide), chloroplast irreversible == Reaction formula...") |
(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * direction: ** left-to-right * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction BIOTIN-CARBOXYL-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** biotin carboxylase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** Category: [[ | + | * Gene: [[SJ14528]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12870]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ02214]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ12670]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ17987]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ00485]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ14529]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ06726]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-5744]], glyoxylate assimilation: | ||
+ | ** '''4''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5743]], 3-hydroxypropanoate cycle: | ||
+ | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: | ||
+ | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY0-1264]], biotin-carboxyl carrier protein assembly: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q06862 Q06862] | ||
+ | ** [http://www.uniprot.org/uniprot/O67483 O67483] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58626 Q58626] | ||
+ | ** [http://www.uniprot.org/uniprot/P43873 P43873] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07] | ||
+ | ** [http://www.uniprot.org/uniprot/P24182 P24182] | ||
+ | ** [http://www.uniprot.org/uniprot/O04983 O04983] | ||
+ | ** [http://www.uniprot.org/uniprot/O81273 O81273] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42777 Q42777] | ||
+ | ** [http://www.uniprot.org/uniprot/Q39825 Q39825] | ||
+ | ** [http://www.uniprot.org/uniprot/O23960 O23960] | ||
+ | ** [http://www.uniprot.org/uniprot/O52602 O52602] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=biotin carboxylase}} |
− | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.3.4.14}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=8}} |
− | {{#set: reconstruction category= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=annotation}} |
+ | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 13:19, 14 January 2021
Contents
Reaction BIOTIN-CARBOXYL-RXN
- direction:
- left-to-right
- common-name:
- biotin carboxylase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 HCO3[c] + 1 biotin-L-lysine-in-BCCP-dimers[c] => 1 ADP[c] + 1 PROTON[c] + 1 Pi[c] + 1 carboxybiotin-L-lysine-in-BCCP-dimers[c]
Gene(s) associated with this reaction
- Gene: SJ14528
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12870
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ02214
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ12670
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ17987
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ00485
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ14529
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ06726
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5744, glyoxylate assimilation:
- 4 reactions found over 13 reactions in the full pathway
- PWY-5743, 3-hydroxypropanoate cycle:
- 5 reactions found over 13 reactions in the full pathway
- PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle:
- 8 reactions found over 18 reactions in the full pathway
- PWY0-1264, biotin-carboxyl carrier protein assembly:
- 3 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links