Difference between revisions of "SJ16140"

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(Created page with "Category:gene == Gene SJ02869 == * transcription-direction: ** negative * right-end-position: ** 63869 * left-end-position: ** 51847 * centisome-position: ** 40.38935...")
(Created page with "Category:gene == Gene SJ10617 == * transcription-direction: ** positive * right-end-position: ** 270840 * left-end-position: ** 254884 * centisome-position: ** 65.84159...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02869 ==
+
== Gene SJ10617 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 63869
+
** 270840
 
* left-end-position:
 
* left-end-position:
−
** 51847
+
** 254884
 
* centisome-position:
 
* centisome-position:
−
** 40.38935    
+
** 65.84159    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PEROXID-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3.1.3.74-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14240]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[GPH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-15288]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-17352]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
* [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8635]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PYAMPP]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14181]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7214]]
+
* [[PWY-7204]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7445]]
+
* [[PWY-181]]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5466]]
+
{{#set: transcription-direction=positive}}
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
{{#set: right-end-position=270840}}
−
* [[PWY-6824]]
+
{{#set: left-end-position=254884}}
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
{{#set: centisome-position=65.84159   }}
−
* [[PWY-5469]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5461]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=63869}}
 
−
{{#set: left-end-position=51847}}
 
−
{{#set: centisome-position=40.38935   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=2}}

Revision as of 18:44, 14 January 2021

Gene SJ10617

  • transcription-direction:
    • positive
  • right-end-position:
    • 270840
  • left-end-position:
    • 254884
  • centisome-position:
    • 65.84159

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7204
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-181
    • 5 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ16140&oldid=93724"