Difference between revisions of "1.1.1.34-RXN"

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(Created page with "Category:reaction == Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN == * direction: ** reversible * common-name: ** cystathionine β-synthase * ec-number: ** [http://enzyme....")
(Created page with "Category:reaction == Reaction 1.1.1.34-RXN == * direction: ** reversible * common-name: ** hydroxymethylglutaryl-coa reductase * ec-number: ** [http://enzyme.expasy.org/EC...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYSTATHIONINE-BETA-SYNTHASE-RXN ==
+
== Reaction 1.1.1.34-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** cystathionine β-synthase
+
** hydroxymethylglutaryl-coa reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.22 ec-4.2.1.22]
+
** [http://enzyme.expasy.org/EC/1.1.1.34 ec-1.1.1.34]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HOMO-CYS]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 2 [[NADPH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ15937]]
+
* Gene: [[SJ18779]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20026]]
+
* Gene: [[SJ18136]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15938]]
+
* Gene: [[SJ05150]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOCYSDEGR-PWY]], L-cysteine biosynthesis III (from L-homocysteine):
+
* [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
+
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-801]], homocysteine and cysteine interconversion:
+
* [[PWY-7391]], isoprene biosynthesis II (engineered):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR107304
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10115 10115]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15992 15992]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01290 R01290]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P32232 P32232]
+
** [http://www.uniprot.org/uniprot/P16393 P16393]
−
** [http://www.uniprot.org/uniprot/P32582 P32582]
+
** [http://www.uniprot.org/uniprot/P14891 P14891]
−
** [http://www.uniprot.org/uniprot/P35520 P35520]
+
** [http://www.uniprot.org/uniprot/P16237 P16237]
−
** [http://www.uniprot.org/uniprot/Q9YCN5 Q9YCN5]
+
** [http://www.uniprot.org/uniprot/P20715 P20715]
−
** [http://www.uniprot.org/uniprot/Q12633 Q12633]
+
** [http://www.uniprot.org/uniprot/Q59468 Q59468]
−
** [http://www.uniprot.org/uniprot/P72662 P72662]
+
** [http://www.uniprot.org/uniprot/Q01237 Q01237]
−
** [http://www.uniprot.org/uniprot/O59701 O59701]
+
** [http://www.uniprot.org/uniprot/Q61671 Q61671]
 +
** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
 +
** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
 +
** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
 +
** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
 +
** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
 +
** [http://www.uniprot.org/uniprot/P04035 P04035]
 +
** [http://www.uniprot.org/uniprot/P00347 P00347]
 +
** [http://www.uniprot.org/uniprot/P29058 P29058]
 +
** [http://www.uniprot.org/uniprot/P29057 P29057]
 +
** [http://www.uniprot.org/uniprot/Q12577 Q12577]
 +
** [http://www.uniprot.org/uniprot/Q12649 Q12649]
 +
** [http://www.uniprot.org/uniprot/Q00583 Q00583]
 +
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
 +
** [http://www.uniprot.org/uniprot/P48022 P48022]
 +
** [http://www.uniprot.org/uniprot/Q43825 Q43825]
 +
** [http://www.uniprot.org/uniprot/Q43826 Q43826]
 +
** [http://www.uniprot.org/uniprot/P14773 P14773]
 +
** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
 +
** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
 +
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
 +
** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
 +
** [http://www.uniprot.org/uniprot/P48019 P48019]
 +
** [http://www.uniprot.org/uniprot/Q41454 Q41454]
 +
** [http://www.uniprot.org/uniprot/Q42506 Q42506]
 +
** [http://www.uniprot.org/uniprot/Q41455 Q41455]
 +
** [http://www.uniprot.org/uniprot/Q41456 Q41456]
 +
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
 +
** [http://www.uniprot.org/uniprot/P48020 P48020]
 +
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
 +
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
 +
** [http://www.uniprot.org/uniprot/O48624 O48624]
 +
** [http://www.uniprot.org/uniprot/O04188 O04188]
 +
** [http://www.uniprot.org/uniprot/O24594 O24594]
 +
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
 +
** [http://www.uniprot.org/uniprot/O64966 O64966]
 +
** [http://www.uniprot.org/uniprot/O64967 O64967]
 +
** [http://www.uniprot.org/uniprot/Q03163 Q03163]
 +
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
 +
** [http://www.uniprot.org/uniprot/P93514 P93514]
 +
** [http://www.uniprot.org/uniprot/O08424 O08424]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=cystathionine &beta;-synthase}}
+
{{#set: common-name=hydroxymethylglutaryl-coa reductase}}
−
{{#set: ec-number=ec-4.2.1.22}}
+
{{#set: ec-number=ec-1.1.1.34}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction 1.1.1.34-RXN

  • direction:
    • reversible
  • common-name:
    • hydroxymethylglutaryl-coa reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-922, mevalonate pathway I (eukaryotes and bacteria):
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (haloarchaea):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered):
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (Thermoplasma):
    • 5 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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