Difference between revisions of "1.1.1.51-RXN"
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(Created page with "Category:reaction == Reaction RXN1G-1437 == * direction: ** left-to-right * common-name: ** 6-o-trans-methoxy-mycolyl-trehalose-6-phosphate phosphohydrolase * ec-number: *...") |
(Created page with "Category:reaction == Reaction RXN-16615 == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy....") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-16615 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** 3-oxoacyl-[acyl-carrier-protein] synthase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/3.1.3. | + | ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] |
| + | ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[3Z-dodec-3-enoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[5Z-3-oxo-tetradec-5-enoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
| − | * Gene: [[ | + | * Gene: [[SJ15983]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| − | * Gene: [[ | + | * Gene: [[SJ18059]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
| + | * Gene: [[SJ15984]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| − | * Gene: [[ | + | * Gene: [[SJ00005]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| − | * Gene: [[ | + | * Gene: [[SJ10624]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
| − | + | * Gene: [[SJ04443]] | |
| − | |||
| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
| − | |||
| − | |||
| − | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| − | * Gene: [[ | + | * Gene: [[SJ06617]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY-7664]], oleate biosynthesis IV (anaerobic): |
| − | ** ''' | + | ** '''13''' reactions found over '''14''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| Line 66: | Line 46: | ||
== External links == | == External links == | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}} |
| − | {{#set: ec-number=ec-3.1.3. | + | {{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=7}} |
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
Revision as of 15:33, 5 January 2021
Contents
Reaction RXN-16615
- direction:
- left-to-right
- common-name:
- 3-oxoacyl-[acyl-carrier-protein] synthase
- ec-number:
Reaction formula
- 1 3Z-dodec-3-enoyl-ACPs[c] + 1 MALONYL-ACP[c] + 1 PROTON[c] => 1 5Z-3-oxo-tetradec-5-enoyl-ACPs[c] + 1 ACP[c] + 1 CARBON-DIOXIDE[c]
Gene(s) associated with this reaction
- Gene: SJ15983
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ18059
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ15984
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ00005
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ10624
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ04443
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06617
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7664, oleate biosynthesis IV (anaerobic):
- 13 reactions found over 14 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
