Difference between revisions of "1.1.1.64-RXN"

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(Created page with "Category:reaction == Reaction RXN0-1134 == * direction: ** left-to-right * common-name: ** pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidored...")
(Created page with "Category:reaction == Reaction METHYLENETHFDEHYDROG-NADP-RXN == * direction: ** reversible * common-name: ** methylenetetrahydrofolate dehydrogenase (nadp+) ** methylenetet...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-1134 ==
+
== Reaction METHYLENETHFDEHYDROG-NADP-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase
+
** methylenetetrahydrofolate dehydrogenase (nadp+)
−
** pyruvate dehydrogenase (nad+)
+
** methylenetetrahydrofolate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.4.1 ec-1.2.4.1]
+
** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-lipoate]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c]
+
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09312]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ12991]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02922]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00971]]
+
* Gene: [[SJ10799]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14925]]
+
* Gene: [[SJ17385]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ01042]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11954]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02262]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA:
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR116057
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22815 22815]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01699 R01699]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06959 P06959]
+
** [http://www.uniprot.org/uniprot/P09440 P09440]
−
** [http://www.uniprot.org/uniprot/P26267 P26267]
+
** [http://www.uniprot.org/uniprot/P07245 P07245]
−
** [http://www.uniprot.org/uniprot/P35485 P35485]
+
** [http://www.uniprot.org/uniprot/P11586 P11586]
−
** [http://www.uniprot.org/uniprot/Q59097 Q59097]
+
** [http://www.uniprot.org/uniprot/P44313 P44313]
−
** [http://www.uniprot.org/uniprot/Q9N1X8 Q9N1X8]
+
** [http://www.uniprot.org/uniprot/P47259 P47259]
−
** [http://www.uniprot.org/uniprot/P45119 P45119]
+
** [http://www.uniprot.org/uniprot/P54382 P54382]
−
** [http://www.uniprot.org/uniprot/P11966 P11966]
+
** [http://www.uniprot.org/uniprot/O67736 O67736]
−
** [http://www.uniprot.org/uniprot/P35488 P35488]
+
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
−
** [http://www.uniprot.org/uniprot/P47515 P47515]
+
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
−
** [http://www.uniprot.org/uniprot/P21882 P21882]
+
** [http://www.uniprot.org/uniprot/P24186 P24186]
−
** [http://www.uniprot.org/uniprot/P47516 P47516]
+
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
−
** [http://www.uniprot.org/uniprot/P21881 P21881]
+
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
−
** [http://www.uniprot.org/uniprot/P21873 P21873]
+
** [http://www.uniprot.org/uniprot/P51696 P51696]
−
** [http://www.uniprot.org/uniprot/P16387 P16387]
+
** [http://www.uniprot.org/uniprot/O65269 O65269]
−
** [http://www.uniprot.org/uniprot/P0AFG8 P0AFG8]
+
** [http://www.uniprot.org/uniprot/O65271 O65271]
−
** [http://www.uniprot.org/uniprot/P08559 P08559]
+
** [http://www.uniprot.org/uniprot/O68031 O68031]
−
** [http://www.uniprot.org/uniprot/P11177 P11177]
+
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
−
** [http://www.uniprot.org/uniprot/P29803 P29803]
+
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
−
** [http://www.uniprot.org/uniprot/P29804 P29804]
 
−
** [http://www.uniprot.org/uniprot/P26284 P26284]
 
−
** [http://www.uniprot.org/uniprot/Q9JU08 Q9JU08]
 
−
** [http://www.uniprot.org/uniprot/Q9CJD6 Q9CJD6]
 
−
** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07]
 
−
** [http://www.uniprot.org/uniprot/Q9CJD5 Q9CJD5]
 
−
** [http://www.uniprot.org/uniprot/Q09171 Q09171]
 
−
** [http://www.uniprot.org/uniprot/P52901 P52901]
 
−
** [http://www.uniprot.org/uniprot/P79931 P79931]
 
−
** [http://www.uniprot.org/uniprot/P79932 P79932]
 
−
** [http://www.uniprot.org/uniprot/Q9D051 Q9D051]
 
−
** [http://www.uniprot.org/uniprot/P10801 P10801]
 
−
** [http://www.uniprot.org/uniprot/P21874 P21874]
 
−
** [http://www.uniprot.org/uniprot/P49432 P49432]
 
−
** [http://www.uniprot.org/uniprot/Q59820 Q59820]
 
−
** [http://www.uniprot.org/uniprot/P35486 P35486]
 
−
** [http://www.uniprot.org/uniprot/P35487 P35487]
 
−
** [http://www.uniprot.org/uniprot/Q06437 Q06437]
 
−
** [http://www.uniprot.org/uniprot/P32473 P32473]
 
−
** [http://www.uniprot.org/uniprot/Q59107 Q59107]
 
−
** [http://www.uniprot.org/uniprot/P73405 P73405]
 
−
** [http://www.uniprot.org/uniprot/Q49109 Q49109]
 
−
** [http://www.uniprot.org/uniprot/O48685 O48685]
 
−
** [http://www.uniprot.org/uniprot/P52902 P52902]
 
−
** [http://www.uniprot.org/uniprot/P52904 P52904]
 
−
** [http://www.uniprot.org/uniprot/P52903 P52903]
 
−
** [http://www.uniprot.org/uniprot/O66112 O66112]
 
−
** [http://www.uniprot.org/uniprot/Q9Y8I5 Q9Y8I5]
 
−
** [http://www.uniprot.org/uniprot/Q9Y8I6 Q9Y8I6]
 
−
** [http://www.uniprot.org/uniprot/O69478 O69478]
 
−
** [http://www.uniprot.org/uniprot/P10802 P10802]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=pyruvate:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine 2-oxidoreductase|pyruvate dehydrogenase (nad+)}}
+
{{#set: common-name=methylenetetrahydrofolate dehydrogenase (nadp+)|methylenetetrahydrofolate dehydrogenase}}
−
{{#set: ec-number=ec-1.2.4.1}}
+
{{#set: ec-number=ec-1.5.1.5}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction METHYLENETHFDEHYDROG-NADP-RXN

  • direction:
    • reversible
  • common-name:
    • methylenetetrahydrofolate dehydrogenase (nadp+)
    • methylenetetrahydrofolate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • 1CMET2-PWY, folate transformations III (E. coli):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-7909, formaldehyde oxidation VII (THF pathway):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-1722, formate assimilation into 5,10-methylenetetrahydrofolate:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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