Difference between revisions of "1.1.1.8-RXN"

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(Created page with "Category:reaction == Reaction RXN-13228 == * direction: ** left-to-right == Reaction formula == * 1 N-methyl-terminal-PPK[c] '''+''' 1 S-ADENOSYLMETHIONINE[c] '''=...")
(Created page with "Category:reaction == Reaction 1.1.1.8-RXN == * direction: ** left-to-right * common-name: ** glycerol 3-phosphate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13228 ==
+
== Reaction 1.1.1.8-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** glycerol 3-phosphate dehydrogenase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[N-methyl-terminal-PPK]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[NN-dimethyl-terminal-PPK]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17434]]
+
* Gene: [[SJ16475]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00878]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6118]], glycerol-3-phosphate shuttle:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7411]], phosphatidate biosynthesis (yeast):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR99876
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13707 P13707]
 +
** [http://www.uniprot.org/uniprot/P08507 P08507]
 +
** [http://www.uniprot.org/uniprot/O25614 O25614]
 +
** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0]
 +
** [http://www.uniprot.org/uniprot/P43798 P43798]
 +
** [http://www.uniprot.org/uniprot/O29390 O29390]
 +
** [http://www.uniprot.org/uniprot/P46919 P46919]
 +
** [http://www.uniprot.org/uniprot/P07735 P07735]
 +
** [http://www.uniprot.org/uniprot/P13706 P13706]
 +
** [http://www.uniprot.org/uniprot/Q00055 Q00055]
 +
** [http://www.uniprot.org/uniprot/P34517 P34517]
 +
** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7]
 +
** [http://www.uniprot.org/uniprot/P21695 P21695]
 +
** [http://www.uniprot.org/uniprot/P41911 P41911]
 +
** [http://www.uniprot.org/uniprot/P90593 P90593]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=glycerol 3-phosphate dehydrogenase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-1.1.1.8}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction 1.1.1.8-RXN

  • direction:
    • left-to-right
  • common-name:
    • glycerol 3-phosphate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6118, glycerol-3-phosphate shuttle:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7411, phosphatidate biosynthesis (yeast):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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