Difference between revisions of "1.11.1.15-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15130 RXN-15130] == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] == * direction: ** reversible * common-name: ** ph...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15130 RXN-15130] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBULOKINASE-RXN PHOSPHORIBULOKINASE-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** cystathionine gamma-lyase
+
** phosphoribulokinase
−
** cystathionine γ-lyase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.4.1.1 ec-4.4.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[CYS]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20026]]
+
* Gene: [[SJ04903]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05358]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05357]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-801]], homocysteine and cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01001 R01001]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21357 P21357]
+
** [http://www.uniprot.org/uniprot/P23010 P23010]
−
** [http://www.uniprot.org/uniprot/P18757 P18757]
+
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
−
** [http://www.uniprot.org/uniprot/P32929 P32929]
+
** [http://www.uniprot.org/uniprot/P19923 P19923]
−
** [http://www.uniprot.org/uniprot/P31373 P31373]
+
** [http://www.uniprot.org/uniprot/P19924 P19924]
−
** [http://www.uniprot.org/uniprot/Q47847 Q47847]
+
** [http://www.uniprot.org/uniprot/P23015 P23015]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P12033 P12033]
−
{{#set: common-name=cystathionine &gamma;-lyase|cystathionine gamma-lyase}}
+
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
−
{{#set: ec-number=ec-4.4.1.1}}
+
** [http://www.uniprot.org/uniprot/P09559 P09559]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P25697 P25697]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P93681 P93681]
−
{{#set: reconstruction category=orthology|annotation}}
+
** [http://www.uniprot.org/uniprot/P19824 P19824]
 +
** [http://www.uniprot.org/uniprot/P27774 P27774]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphoribulokinase}}
 +
{{#set: ec-number=ec-2.7.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}

Revision as of 09:32, 27 August 2019

Reaction PHOSPHORIBULOKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoribulokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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