Difference between revisions of "1.14.11.1-RXN"

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(Created page with "Category:reaction == Reaction PYRAMKIN-RXN == * direction: ** left-to-right * common-name: ** pyridoxamine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-...")
(Created page with "Category:reaction == Reaction 3.1.22.4-RXN == * direction: ** left-to-right * common-name: ** crossover junction endodeoxyribonuclease * ec-number: ** [http://enzyme.expas...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRAMKIN-RXN ==
+
== Reaction 3.1.22.4-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pyridoxamine kinase
+
** crossover junction endodeoxyribonuclease
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
+
** [http://enzyme.expasy.org/EC/3.1.22.4 ec-3.1.22.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
+
* 1 [[DNA-Combined-With-Exogenous-DNA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Resolution-of-Recombinational-Junction]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14436]]
+
* Gene: [[SJ15185]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ18163]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ08289]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25105 25105]
+
** [http://www.uniprot.org/uniprot/P0A814 P0A814]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P44633 P44633]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
+
** [http://www.uniprot.org/uniprot/O83530 O83530]
 +
** [http://www.uniprot.org/uniprot/O84510 O84510]
 +
** [http://www.uniprot.org/uniprot/O25544 O25544]
 +
** [http://www.uniprot.org/uniprot/Q9PLU8 Q9PLU8]
 +
** [http://www.uniprot.org/uniprot/Q51424 Q51424]
 +
** [http://www.uniprot.org/uniprot/Q37873 Q37873]
 +
** [http://www.uniprot.org/uniprot/P0AG74 P0AG74]
 +
** [http://www.uniprot.org/uniprot/Q55506 Q55506]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyridoxamine kinase}}
+
{{#set: common-name=crossover junction endodeoxyribonuclease}}
−
{{#set: ec-number=ec-2.7.1.35}}
+
{{#set: ec-number=ec-3.1.22.4}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:20, 15 January 2021

Reaction 3.1.22.4-RXN

  • direction:
    • left-to-right
  • common-name:
    • crossover junction endodeoxyribonuclease
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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