Difference between revisions of "1.14.11.1-RXN"

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(Created page with "Category:reaction == Reaction RXN-17889 == * direction: ** left-to-right * common-name: ** arginyl-trna--protein transferase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
(Created page with "Category:reaction == Reaction 1.14.11.1-RXN == * direction: ** left-to-right * common-name: ** γ-butyrobetaine dioxygenase * ec-number: ** [http://enzyme.expasy.org/...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-17889 ==
+
== Reaction 1.14.11.1-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** arginyl-trna--protein transferase
+
** γ-butyrobetaine dioxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.2.8 ec-2.3.2.8]
+
** [http://enzyme.expasy.org/EC/1.14.11.1 ec-1.14.11.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Charged-ARG-tRNAs]][c] '''+''' 1 [[Proteins-With-N-Terminal-Asp]][c] '''=>''' 1 [[ARG-tRNAs]][c] '''+''' 1 [[L-arginyl-L-aspartyl-Peptides]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[GAMMA-BUTYROBETAINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CARNITINE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03517]]
+
* Gene: [[SJ01929]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ11793]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01883]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7799]], Arg/N-end rule pathway (eukaryotic):
+
* [[PWY-6100]], L-carnitine biosynthesis:
−
** '''7''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3621]], γ-butyrobetaine degradation:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR121240
+
* METANETX-RXN : MNXR96215
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24029 24029]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02397 R02397]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=arginyl-trna--protein transferase}}
+
{{#set: common-name=γ-butyrobetaine dioxygenase}}
−
{{#set: ec-number=ec-2.3.2.8}}
+
{{#set: ec-number=ec-1.14.11.1}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 1.14.11.1-RXN

  • direction:
    • left-to-right
  • common-name:
    • γ-butyrobetaine dioxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6100, L-carnitine biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-3621, γ-butyrobetaine degradation:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR96215
  • RHEA:
  • LIGAND-RXN:





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