Difference between revisions of "1.2.1.25-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39. RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROT...")
(Created page with "Category:reaction == Reaction DXS-RXN == * direction: ** left-to-right * common-name: ** 1-deoxy-d-xylulose-5-phosphate synthase ** 1-deoxyxylulose-5-phosphate synthase *...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39. RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.] ==
+
== Reaction DXS-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** 1-deoxy-d-xylulose-5-phosphate synthase
 +
** 1-deoxyxylulose-5-phosphate synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.7 ec-2.2.1.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD-14916]][c] '''+''' 1.0 [[NADP]][c] '''<=>''' 1.0 [[CPD0-2106]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c]
+
* 1 [[GAP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ15200]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12529]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* RHEA:
−
{{#set: nb gene associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12606 12606]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=gap-filling}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
−
{{#set: reconstruction tool=meneco}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: common-name=1-deoxyxylulose-5-phosphate synthase|1-deoxy-d-xylulose-5-phosphate synthase}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: ec-number=ec-2.2.1.7}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:41, 18 December 2020

Reaction DXS-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-deoxy-d-xylulose-5-phosphate synthase
    • 1-deoxyxylulose-5-phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6891, thiazole biosynthesis II (aerobic bacteria):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria):
    • 5 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 3 reactions found over 7 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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