Difference between revisions of "1.2.3.14-RXN"

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(Created page with "Category:reaction == Reaction RXN-8660 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
(Created page with "Category:reaction == Reaction 1.2.3.14-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.2.3.14 ec-1.2.3.14] == Reaction formula == * 1 [...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8660 ==
+
== Reaction 1.2.3.14-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
+
* ec-number:
−
** [histone-h3]-lysine-36 demethylase
+
** [http://enzyme.expasy.org/EC/1.2.3.14 ec-1.2.3.14]
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** histone demethylase activity (h3-k36 specific)
 
−
* synonymous:
 
−
** h3-k36-specific demethylase
 
−
** jhdm1a
 
−
** histone-lysine (h3-k36) demethylase
 
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
−
** histone demethylase
 
−
** jmjc domain-containing histone demethylase 1a
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[CPD-692]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-693]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13421]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18735]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19354]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00708]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19102]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ05371]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-695]], abscisic acid biosynthesis:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[previous_meneco]]; tool: [[curation]]; comment: reaction added with meneco (previous version)
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR110680
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21789 21789]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20530 20530]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R06957 R06957]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
+
{{#set: ec-number=ec-1.2.3.14}}
−
{{#set: synonymous=jmjc domain-containing histone demethylase 1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|h3-k36-specific demethylase|histone-lysine (h3-k36) demethylase|histone demethylase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction comment=reaction added with meneco (previous version)}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=previous_meneco}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:24, 18 March 2021

Reaction 1.2.3.14-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-695, abscisic acid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110680
  • RHEA:
  • LIGAND-RXN:





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