Difference between revisions of "1.21.3.1-RXN"

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(Created page with "Category:reaction == Reaction 1TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...")
(Created page with "Category:reaction == Reaction RXN-12565 == * direction: ** left-to-right * common-name: ** 3-oxohexanoyl-coa thiolase ** acetyl-coa c-acyltransferase * ec-number: ** [http...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1TRANSKETO-RXN ==
+
== Reaction RXN-12565 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** transketolase
+
** 3-oxohexanoyl-coa thiolase
 +
** acetyl-coa c-acyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[RIBOSE-5P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[BUTYRYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[K-HEXANOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12529]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ09371]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12026]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21818]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21817]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P124-PWY]], Bifidobacterium shunt:
+
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered):
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P21-PWY]], pentose phosphate pathway (partial):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10511 10511]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01641 R01641]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P29401 P29401]
+
{{#set: common-name=3-oxohexanoyl-coa thiolase|acetyl-coa c-acyltransferase}}
−
** [http://www.uniprot.org/uniprot/P33570 P33570]
+
{{#set: ec-number=ec-2.3.1.16}}
−
** [http://www.uniprot.org/uniprot/P21725 P21725]
+
{{#set: nb gene associated=5}}
−
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
 
−
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
 
−
** [http://www.uniprot.org/uniprot/P21726 P21726]
 
−
** [http://www.uniprot.org/uniprot/P47312 P47312]
 
−
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
 
−
** [http://www.uniprot.org/uniprot/P43757 P43757]
 
−
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
 
−
** [http://www.uniprot.org/uniprot/P45694 P45694]
 
−
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
 
−
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
 
−
** [http://www.uniprot.org/uniprot/P34736 P34736]
 
−
** [http://www.uniprot.org/uniprot/P33315 P33315]
 
−
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
 
−
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
 
−
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
 
−
** [http://www.uniprot.org/uniprot/P46708 P46708]
 
−
** [http://www.uniprot.org/uniprot/P75611 P75611]
 
−
** [http://www.uniprot.org/uniprot/P73282 P73282]
 
−
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
 
−
** [http://www.uniprot.org/uniprot/O20250 O20250]
 
−
** [http://www.uniprot.org/uniprot/O78327 O78327]
 
−
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
 
−
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
 
−
** [http://www.uniprot.org/uniprot/P23254 P23254]
 
−
** [http://www.uniprot.org/uniprot/P27302 P27302]
 
−
** [http://www.uniprot.org/uniprot/P29277 P29277]
 
−
** [http://www.uniprot.org/uniprot/P22976 P22976]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=transketolase}}
 
−
{{#set: ec-number=ec-2.2.1.1}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=7}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:34, 5 January 2021

Reaction RXN-12565

  • direction:
    • left-to-right
  • common-name:
    • 3-oxohexanoyl-coa thiolase
    • acetyl-coa c-acyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6863, pyruvate fermentation to hexanol (engineered):
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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