Difference between revisions of "1.21.3.1-RXN"
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(Created page with "Category:reaction == Reaction RXN-15122 == * direction: ** reversible * common-name: ** threonine deaminase == Reaction formula == * 1 THR[c] '''<=>''' 1 CPD-15056...") |
(Created page with "Category:reaction == Reaction 1TRANSKETO-RXN == * direction: ** reversible * common-name: ** transketolase * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1]...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 1TRANSKETO-RXN == |
* direction: | * direction: | ||
** reversible | ** reversible | ||
* common-name: | * common-name: | ||
− | ** | + | ** transketolase |
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.2.1.1 ec-2.2.1.1] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[GAP]][c] '''<=>''' 1 [[RIBOSE-5P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ12529]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | * Gene: [[SJ12026]] | |
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[P124-PWY]], Bifidobacterium shunt: |
− | ** ''' | + | ** '''12''' reactions found over '''15''' reactions in the full pathway |
− | * [[PWY- | + | * [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: |
− | ** ''' | + | ** '''12''' reactions found over '''13''' reactions in the full pathway |
− | * [[ | + | * [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): |
− | ** ''' | + | ** '''11''' reactions found over '''12''' reactions in the full pathway |
+ | * [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P21-PWY]], pentose phosphate pathway (partial): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5723]], Rubisco shunt: | ||
+ | ** '''10''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10511 10511] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01641 R01641] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P29401 P29401] | ||
+ | ** [http://www.uniprot.org/uniprot/P33570 P33570] | ||
+ | ** [http://www.uniprot.org/uniprot/P21725 P21725] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58094 Q58094] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56] | ||
+ | ** [http://www.uniprot.org/uniprot/P21726 P21726] | ||
+ | ** [http://www.uniprot.org/uniprot/P47312 P47312] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31] | ||
+ | ** [http://www.uniprot.org/uniprot/P43757 P43757] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58092 Q58092] | ||
+ | ** [http://www.uniprot.org/uniprot/P45694 P45694] | ||
+ | ** [http://www.uniprot.org/uniprot/Q52723 Q52723] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475] | ||
+ | ** [http://www.uniprot.org/uniprot/P34736 P34736] | ||
+ | ** [http://www.uniprot.org/uniprot/P33315 P33315] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42675 Q42675] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42676 Q42676] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42677 Q42677] | ||
+ | ** [http://www.uniprot.org/uniprot/P46708 P46708] | ||
+ | ** [http://www.uniprot.org/uniprot/P75611 P75611] | ||
+ | ** [http://www.uniprot.org/uniprot/P73282 P73282] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49047 Q49047] | ||
+ | ** [http://www.uniprot.org/uniprot/O20250 O20250] | ||
+ | ** [http://www.uniprot.org/uniprot/O78327 O78327] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7] | ||
+ | ** [http://www.uniprot.org/uniprot/P23254 P23254] | ||
+ | ** [http://www.uniprot.org/uniprot/P27302 P27302] | ||
+ | ** [http://www.uniprot.org/uniprot/P29277 P29277] | ||
+ | ** [http://www.uniprot.org/uniprot/P22976 P22976] | ||
+ | </div> | ||
{{#set: direction=reversible}} | {{#set: direction=reversible}} | ||
− | {{#set: common-name= | + | {{#set: common-name=transketolase}} |
+ | {{#set: ec-number=ec-2.2.1.1}} | ||
{{#set: nb gene associated=2}} | {{#set: nb gene associated=2}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
− | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:03, 5 January 2021
Contents
Reaction 1TRANSKETO-RXN
- direction:
- reversible
- common-name:
- transketolase
- ec-number:
Reaction formula
- 1 D-SEDOHEPTULOSE-7-P[c] + 1 GAP[c] <=> 1 RIBOSE-5P[c] + 1 XYLULOSE-5-PHOSPHATE[c]
Gene(s) associated with this reaction
- Gene: SJ12529
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12026
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- P124-PWY, Bifidobacterium shunt:
- 12 reactions found over 15 reactions in the full pathway
- CALVIN-PWY, Calvin-Benson-Bassham cycle:
- 12 reactions found over 13 reactions in the full pathway
- P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
- 11 reactions found over 12 reactions in the full pathway
- PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
- 7 reactions found over 9 reactions in the full pathway
- P21-PWY, pentose phosphate pathway (partial):
- 3 reactions found over 3 reactions in the full pathway
- NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch):
- 5 reactions found over 5 reactions in the full pathway
- PWY-5723, Rubisco shunt:
- 10 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links