Difference between revisions of "1.3.7.2-RXN"

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(Created page with "Category:reaction == Reaction RXN-10059 == * direction: ** left-to-right * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction 1.3.7.2-RXN == * direction: ** left-to-right * common-name: ** 15,16-dihydrobiliverdin:ferredoxin oxidoreductase * ec-number: ** [http://enzy...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10059 ==
+
== Reaction 1.3.7.2-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** 15,16-dihydrobiliverdin:ferredoxin oxidoreductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/1.3.7.2 ec-1.3.7.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Lignoceroyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-cerotoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[BILIVERDINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[1516-DIHYDROBILIVERDIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03344]]
−
* Gene: [[SJ06617]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ00005]]
+
* Gene: [[SJ04340]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15984]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6113]], superpathway of mycolate biosynthesis:
+
* [[PWY-5915]], phycoerythrobilin biosynthesis I:
−
** '''8''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWYG-321]], mycolate biosynthesis:
+
* [[PWY-7579]], phycourobilin biosynthesis:
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR114971
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10170 10170]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05818 R05818]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: common-name=15,16-dihydrobiliverdin:ferredoxin oxidoreductase}}
−
{{#set: ec-number=ec-2.3.1.41}}
+
{{#set: ec-number=ec-1.3.7.2}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction 1.3.7.2-RXN

  • direction:
    • left-to-right
  • common-name:
    • 15,16-dihydrobiliverdin:ferredoxin oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5915, phycoerythrobilin biosynthesis I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7579, phycourobilin biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR114971
  • RHEA:
  • LIGAND-RXN:





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