Difference between revisions of "1.3.7.3-RXN"

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(Created page with "Category:reaction == Reaction RXN-8042 == * direction: ** left-to-right * common-name: ** prolycopene isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.2.1.13 ec-5....")
(Created page with "Category:reaction == Reaction 1.3.7.3-RXN == * direction: ** left-to-right * common-name: ** phycoerythrobilin:ferredoxin oxidoreductase * ec-number: ** [http://enzyme.exp...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8042 ==
+
== Reaction 1.3.7.3-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** prolycopene isomerase
+
** phycoerythrobilin:ferredoxin oxidoreductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.2.1.13 ec-5.2.1.13]
+
** [http://enzyme.expasy.org/EC/1.3.7.3 ec-1.3.7.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
+
* 1 [[1516-DIHYDROBILIVERDIN]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[3Z-PHYCOERYTHROBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05083]]
+
* Gene: [[SJ04581]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
+
* [[PWY-5915]], phycoerythrobilin biosynthesis I:
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7579]], phycourobilin biosynthesis:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR111133
+
* METANETX-RXN : MNXR114972
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22094 22094]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05819 R05819]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=prolycopene isomerase}}
+
{{#set: common-name=phycoerythrobilin:ferredoxin oxidoreductase}}
−
{{#set: ec-number=ec-5.2.1.13}}
+
{{#set: ec-number=ec-1.3.7.3}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 1.3.7.3-RXN

  • direction:
    • left-to-right
  • common-name:
    • phycoerythrobilin:ferredoxin oxidoreductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5915, phycoerythrobilin biosynthesis I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7579, phycourobilin biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR114972
  • RHEA:
  • LIGAND-RXN:





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