Difference between revisions of "1.4.3.19-RXN"

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(Created page with "Category:reaction == Reaction DEHYDDEOXPHOSGALACT-ALDOL-RXN == * direction: ** reversible * common-name: ** 2-oxo-3-deoxygalactonate 6-phosphate aldolase * ec-number: ** [...")
(Created page with "Category:reaction == Reaction 2.1.1.113-RXN == * direction: ** left-to-right * common-name: ** site-specific dna-methyltransferase (cytosine-n4-specific) * ec-number: ** [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DEHYDDEOXPHOSGALACT-ALDOL-RXN ==
+
== Reaction 2.1.1.113-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-oxo-3-deoxygalactonate 6-phosphate aldolase
+
** site-specific dna-methyltransferase (cytosine-n4-specific)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/2.1.1.113 ec-2.1.1.113]
−
** [http://enzyme.expasy.org/EC/4.1.2.21 ec-4.1.2.21]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDRO-DEOXY-GALACTONATE-PHOSPHATE]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DNA-N4-Methylcytosine]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03464]]
+
* Gene: [[SJ01551]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10173]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09110]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7130]], L-glucose degradation:
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[GALACTCAT-PWY]], D-galactonate degradation:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR107883
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24467 24467]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01064 R01064]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03003 R03003]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=2-oxo-3-deoxygalactonate 6-phosphate aldolase}}
+
** [http://www.uniprot.org/uniprot/Q04845 Q04845]
−
{{#set: ec-number=ec-4.1.2.55|ec-4.1.2.21}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=site-specific dna-methyltransferase (cytosine-n4-specific)}}
−
{{#set: nb pathway associated=2}}
+
{{#set: ec-number=ec-2.1.1.113}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction 2.1.1.113-RXN

  • direction:
    • left-to-right
  • common-name:
    • site-specific dna-methyltransferase (cytosine-n4-specific)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR107883
  • LIGAND-RXN:
  • UNIPROT:





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