Difference between revisions of "1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44."

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(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction 1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44. == * direction: ** left-to-right == Reaction formula == * 1.0 METHYLENE-THF[...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMDECARB-RXN ==
+
== Reaction 1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44. ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** diaminopimelate decarboxylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
* 1.0 [[METHYLENE-THF]][c] '''+''' 1.0 [[NADH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[5-METHYL-THF]][c] '''+''' 1.0 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09103]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00674]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21359]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
 
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
 
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
 
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
 
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
 
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
 
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
 
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
 
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
 
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
 
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
 
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=diaminopimelate decarboxylase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-4.1.1.20}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=3}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=4}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:21, 18 March 2021

Reaction 1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44.&oldid=141589"