Difference between revisions of "1.5.99.12-RXN"

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(Created page with "Category:reaction == Reaction RXN-17105 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19] == Reaction formula == * 1 CPD-...")
(Created page with "Category:reaction == Reaction RXN-8026 == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == * 1 CPD-7409[c] '''+''' 1 OXYGEN-MOLECULE[c] '...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-17105 ==
+
== Reaction RXN-8026 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19]
+
** crtz
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12646]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-14407]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ07227]]
 +
** Category: [[manual]]
 +
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
 +
* Gene: [[SJ07228]]
 +
** Category: [[manual]]
 +
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals):
+
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis):
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5944]], zeaxanthin biosynthesis:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae):
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[manual]]; source: [[sjap]]; tool: [[curation]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.19}}
+
{{#set: synonymous=crtz}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=sjap}}

Revision as of 11:25, 15 January 2021

Reaction RXN-8026

  • direction:
    • left-to-right
  • synonymous:
    • crtz

Reaction formula

Gene(s) associated with this reaction

  • Gene: SJ07227
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
  • Gene: SJ07228
    • Category: manual
      • Source: sjap, Tool: unknown-tool, Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)

Pathway(s)

  • PWY-7638, echinenone and zeaxanthin biosynthesis (Synechocystis):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5944, zeaxanthin biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5288, astaxanthin biosynthesis (bacteria, fungi, algae):
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

  • category: manual; source: sjap; tool: curation; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)

External links





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