Difference between revisions of "1.5.99.12-RXN"

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(Created page with "Category:reaction == Reaction MANNPISOM-RXN == * direction: ** reversible * common-name: ** mannose-6-phosphate isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3....")
(Created page with "Category:reaction == Reaction RXN-10036 == * direction: ** left-to-right * common-name: ** phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase ** pi(3,4,5)p3 5-phosphat...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MANNPISOM-RXN ==
+
== Reaction RXN-10036 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** mannose-6-phosphate isomerase
+
** phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase
 +
** pi(3,4,5)p3 5-phosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.8 ec-5.3.1.8]
+
** [http://enzyme.expasy.org/EC/3.1.3.86 ec-3.1.3.86]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15979]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
+
* 1 [[PHOSPHATIDYLINOSITOL-345-TRIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-PHOSPHATIDYL-1D-MYO-INOSITOL-34-BISPH]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ05163]]
−
* Gene: [[SJ15069]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ11565]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01610]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ22044]]
+
* Gene: [[SJ20267]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15067]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3861]], mannitol degradation II:
+
* [[PWY-6368]], 3-phosphoinositide degradation:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5659]], GDP-mannose biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7586]], &beta;-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation:
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6992]], 1,5-anhydrofructose degradation:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway):
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-3881]], mannitol biosynthesis:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[MANNCAT-PWY]], D-mannose degradation:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R09827 R09827]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12359 12359]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25531 25531]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00772 R00772]
+
{{#set: common-name=pi(3,4,5)p3 5-phosphatase|phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-3.1.3.86}}
−
** [http://www.uniprot.org/uniprot/P07874 P07874]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P29951 P29951]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P39841 P39841]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P00946 P00946]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P25081 P25081]
 
−
** [http://www.uniprot.org/uniprot/Q52206 Q52206]
 
−
** [http://www.uniprot.org/uniprot/P34949 P34949]
 
−
** [http://www.uniprot.org/uniprot/P29952 P29952]
 
−
** [http://www.uniprot.org/uniprot/P34948 P34948]
 
−
** [http://www.uniprot.org/uniprot/Q55183 Q55183]
 
−
** [http://www.uniprot.org/uniprot/P73377 P73377]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=mannose-6-phosphate isomerase}}
 
−
{{#set: ec-number=ec-5.3.1.8}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=8}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:18, 14 January 2021

Reaction RXN-10036

  • direction:
    • left-to-right
  • common-name:
    • phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase
    • pi(3,4,5)p3 5-phosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6368, 3-phosphoinositide degradation:
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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