Difference between revisions of "1.6.4.4-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10974 RXN-10974] == * direction: ** left-to-right * common-name: ** 1-diphosphoinositol pentaki...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == * direction: ** left-to-right * common-name: ** quinoli...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** quinolinate phosphoribosyltransferase (decarboxylating) |
+ | ** nicotinate-nucleotide diphosphorylase (carboxylating) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2. | + | ** [http://enzyme.expasy.org/EC/2.4.2.19 ec-2.4.2.19] |
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ19144]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ04451]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | * Gene: [[SJ11253]] |
− | * Gene: [[ | + | ** Category: [[orthology]] |
− | ** Category: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653] |
− | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342] | ||
+ | ** '''4''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316] | ||
+ | ** '''3''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12735 12735] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57916 Q57916] | ||
+ | ** [http://www.uniprot.org/uniprot/P30011 P30011] | ||
+ | ** [http://www.uniprot.org/uniprot/P46714 P46714] | ||
+ | ** [http://www.uniprot.org/uniprot/Q15274 Q15274] | ||
+ | ** [http://www.uniprot.org/uniprot/P77938 P77938] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=quinolinate phosphoribosyltransferase (decarboxylating)|nicotinate-nucleotide diphosphorylase (carboxylating)}} |
− | {{#set: ec-number=ec-2 | + | {{#set: ec-number=ec-2.4.2.19}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction QUINOPRIBOTRANS-RXN
- direction:
- left-to-right
- common-name:
- quinolinate phosphoribosyltransferase (decarboxylating)
- nicotinate-nucleotide diphosphorylase (carboxylating)
- ec-number:
Reaction formula
- 2 PROTON[c] + 1 PRPP[c] + 1 QUINOLINATE[c] => 1 CARBON-DIOXIDE[c] + 1 NICOTINATE_NUCLEOTIDE[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ19144
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ04451
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11253
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: PWY-5653
- 3 reactions found over 4 reactions in the full pathway
- PYRIDNUCSYN-PWY, NAD de novo biosynthesis I (from aspartate): PYRIDNUCSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-7342, superpathway of nicotine biosynthesis: PWY-7342
- 4 reactions found over 9 reactions in the full pathway
- PWY-5316, nicotine biosynthesis: PWY-5316
- 3 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links