Difference between revisions of "1.8.3.5-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=NADPHOS-DEPHOS-PWY NADPHOS-DEPHOS-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?ob...")
(Created page with "Category:reaction == Reaction DTDPGLUCDEHYDRAT-RXN == * direction: ** left-to-right * common-name: ** dtdp-glucose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.or...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=NADPHOS-DEPHOS-PWY NADPHOS-DEPHOS-PWY] ==
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== Reaction DTDPGLUCDEHYDRAT-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-33208]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
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** nad phosphorylation and dephosphorylation
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** dtdp-glucose 4,6-dehydratase
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== Reaction(s) found ==
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* ec-number:
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* [[NAD-KIN-RXN]]
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** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
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* [[RXN-5822]]
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== Reaction formula ==
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* [[TRANS-RXN0-277]]
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* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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All reactions of this pathways are in present
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* Gene: [[SJ10476]]
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{{#set: taxonomic-range=tax-2|tax-33208}}
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** Category: [[orthology]]
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{{#set: common-name=nad phosphorylation and dephosphorylation}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=3}}
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* Gene: [[SJ16241]]
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{{#set: completion rate=1.0}}
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** Category: [[annotation]]
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{{#set: nb total reaction=3}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ00231]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-6808]], dTDP-D-forosamine biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis:
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7104]], dTDP-L-megosamine biosynthesis:
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6974]], dTDP-L-olivose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6976]], dTDP-L-mycarose biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis:
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** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis:
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** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis:
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7814]], dTDP-L-daunosamine biosynthesis:
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-3221]]:
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** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis:
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** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis:
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** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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</div>
 +
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
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** [http://www.uniprot.org/uniprot/P44914 P44914]
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** [http://www.uniprot.org/uniprot/P29782 P29782]
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** [http://www.uniprot.org/uniprot/P27830 P27830]
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** [http://www.uniprot.org/uniprot/P55294 P55294]
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** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
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** [http://www.uniprot.org/uniprot/P37759 P37759]
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** [http://www.uniprot.org/uniprot/P26391 P26391]
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** [http://www.uniprot.org/uniprot/Q59626 Q59626]
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** [http://www.uniprot.org/uniprot/P39630 P39630]
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** [http://www.uniprot.org/uniprot/P37777 P37777]
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** [http://www.uniprot.org/uniprot/P37761 P37761]
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** [http://www.uniprot.org/uniprot/Q54144 Q54144]
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** [http://www.uniprot.org/uniprot/Q56173 Q56173]
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** [http://www.uniprot.org/uniprot/Q55420 Q55420]
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** [http://www.uniprot.org/uniprot/P55293 P55293]
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** [http://www.uniprot.org/uniprot/O66249 O66249]
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** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
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** [http://www.uniprot.org/uniprot/O08246 O08246]
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** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
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** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
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{{#set: ec-number=ec-4.2.1.46}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=20}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:46, 18 December 2020

Reaction DTDPGLUCDEHYDRAT-RXN

  • direction:
    • left-to-right
  • common-name:
    • dtdp-glucose 4,6-dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6808, dTDP-D-forosamine biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6976, dTDP-L-mycarose biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis:
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis:
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-3221:
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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