Difference between revisions of "1.8.4.14-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-8661 == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demethylase ** histone demethylase activity (h3-k36 specif...")
(Created page with "Category:reaction == Reaction MMUM-RXN == * direction: ** left-to-right * common-name: ** homocysteine s-methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8661 ==
+
== Reaction MMUM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** [histone-h3]-lysine-36 demethylase
+
** homocysteine s-methyltransferase
−
** histone demethylase activity (h3-k36 specific)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
+
** [http://enzyme.expasy.org/EC/2.1.1.10 ec-2.1.1.10]
−
* synonymous:
 
−
** h3-k36-specific demethylase
 
−
** jhdm1a
 
−
** histone-lysine (h3-k36) demethylase
 
−
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 
−
** histone demethylase
 
−
** jmjc domain-containing histone demethylase 1a
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[CPD-397]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 2 [[MET]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18735]]
+
* Gene: [[SJ07112]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05371]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19102]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00708]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13421]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19354]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5441]], S-methyl-L-methionine cycle:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-702]], L-methionine biosynthesis II (plants):
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26338 26338]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=[histone-h3]-lysine-36 demethylase|histone demethylase activity (h3-k36 specific)}}
+
{{#set: common-name=homocysteine s-methyltransferase}}
−
{{#set: ec-number=ec-1.14.11}}
+
{{#set: ec-number=ec-2.1.1.10}}
−
{{#set: synonymous=jmjc domain-containing histone demethylase 1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a|h3-k36-specific demethylase|histone-lysine (h3-k36) demethylase|histone demethylase}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction MMUM-RXN

  • direction:
    • left-to-right
  • common-name:
    • homocysteine s-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5441, S-methyl-L-methionine cycle:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-702, L-methionine biosynthesis II (plants):
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=1.8.4.14-RXN&oldid=88585"