Difference between revisions of "1.8.5.1-RXN"

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(Created page with "Category:reaction == Reaction RXN-7913 == * direction: ** left-to-right * common-name: ** dcmp kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25] **...")
(Created page with "Category:reaction == Reaction AGMATIN-RXN == * direction: ** left-to-right * common-name: ** agmatinase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-7913 ==
+
== Reaction AGMATIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dcmp kinase
+
** agmatinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.25 ec-2.7.4.25]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
−
** [http://enzyme.expasy.org/EC/2.7.4.14 ec-2.7.4.14]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[DCMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCDP]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ00773]]
−
* Gene: [[SJ01032]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20076]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21099]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08159]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ21967]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
+
* [[PWY-6305]], superpathway of putrescine biosynthesis:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25095 25095]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01665 R01665]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P60654 P60654]
 +
** [http://www.uniprot.org/uniprot/P60653 P60653]
 +
** [http://www.uniprot.org/uniprot/P60651 P60651]
 +
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
 +
** [http://www.uniprot.org/uniprot/P73270 P73270]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dcmp kinase}}
+
{{#set: common-name=agmatinase}}
−
{{#set: ec-number=ec-2.7.4.25|ec-2.7.4.13|ec-2.7.4.14}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:20, 15 January 2021

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, superpathway of putrescine biosynthesis:
    • 4 reactions found over n.a reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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