Difference between revisions of "1.8.5.1-RXN"

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(Created page with "Category:reaction == Reaction 3.6.3.43-RXN == * direction: ** left-to-right * common-name: ** peptide-transporting atpase * ec-number: ** [http://enzyme.expasy.org/EC/3.6....")
(Created page with "Category:reaction == Reaction RXN-8665 == * direction: ** left-to-right * common-name: ** tryptophan 2,3-dioxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.6.3.43-RXN ==
+
== Reaction RXN-8665 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** peptide-transporting atpase
+
** tryptophan 2,3-dioxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.3.43 ec-3.6.3.43]
+
** [http://enzyme.expasy.org/EC/1.13.11.11 ec-1.13.11.11]
 +
** [http://enzyme.expasy.org/EC/1.13.11.52 ec-1.13.11.52]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Peptides-holder]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Peptides-holder]][e] '''+''' 1 [[Pi]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[N-FORMYLKYNURENINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06172]]
+
* Gene: [[SJ12575]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02793]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I:
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[TRPCAT-PWY]], L-tryptophan degradation I (via anthranilate):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00678 R00678]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P21643 P21643]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14430 14430]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24536 24536]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=peptide-transporting atpase}}
+
{{#set: common-name=tryptophan 2,3-dioxygenase}}
−
{{#set: ec-number=ec-3.6.3.43}}
+
{{#set: ec-number=ec-1.13.11.52|ec-1.13.11.11}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:31, 5 January 2021

Reaction RXN-8665

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5651, L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6309, L-tryptophan degradation XI (mammalian, via kynurenine):
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-7765, 3-hydroxy-4-methyl-anthranilate biosynthesis II:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7717, 3-hydroxy-4-methyl-anthranilate biosynthesis I:
    • 3 reactions found over 6 reactions in the full pathway
  • TRPCAT-PWY, L-tryptophan degradation I (via anthranilate):
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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