Difference between revisions of "12-OXOPHYTODIENOATE-REDUCTASE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.39-RXN 3.2.1.39-RXN] == * direction: ** left-to-right * common-name: ** glucan endo-1,3-beta-...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9644 RXN-9644] == * direction: ** left-to-right * common-name: ** acyl-coa synthetase ** long-c...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.39-RXN 3.2.1.39-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9644 RXN-9644] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** glucan endo-1,3-beta-d-glucosidase
+
** acyl-coa synthetase
 +
** long-chain fatty acid-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.39 ec-3.2.1.39]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[1-3-beta-D-Glucans]][c] '''+''' 1 [[Glucopyranose]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[OLEATE-CPD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[OLEOYL-COA]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ18897]]
+
* Gene: [[SJ05591]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ00941]]
+
* Gene: [[SJ03650]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06638]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05782]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14973]]
+
* Gene: [[SJ08691]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11958]]
+
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ05533]]
+
* Gene: [[SJ08692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ05532]]
+
* Gene: [[SJ08690]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16402]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ05257]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6001]], linoleate biosynthesis II (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6001 PWY-6001]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5147]], oleate biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5147 PWY-5147]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7M1Y3 Q7M1Y3]
 
−
** [http://www.uniprot.org/uniprot/P23546 P23546]
 
−
** [http://www.uniprot.org/uniprot/Q7M1Y2 Q7M1Y2]
 
−
** [http://www.uniprot.org/uniprot/P23547 P23547]
 
−
** [http://www.uniprot.org/uniprot/P27666 P27666]
 
−
** [http://www.uniprot.org/uniprot/Q7M1Y5 Q7M1Y5]
 
−
** [http://www.uniprot.org/uniprot/Q7M1Y4 Q7M1Y4]
 
−
** [http://www.uniprot.org/uniprot/P34742 P34742]
 
−
** [http://www.uniprot.org/uniprot/Q02437 Q02437]
 
−
** [http://www.uniprot.org/uniprot/Q45095 Q45095]
 
−
** [http://www.uniprot.org/uniprot/P33157 P33157]
 
−
** [http://www.uniprot.org/uniprot/Q41181 Q41181]
 
−
** [http://www.uniprot.org/uniprot/P15737 P15737]
 
−
** [http://www.uniprot.org/uniprot/P23432 P23432]
 
−
** [http://www.uniprot.org/uniprot/P23433 P23433]
 
−
** [http://www.uniprot.org/uniprot/P36401 P36401]
 
−
** [http://www.uniprot.org/uniprot/Q40753 Q40753]
 
−
** [http://www.uniprot.org/uniprot/Q7M1V4 Q7M1V4]
 
−
** [http://www.uniprot.org/uniprot/Q02126 Q02126]
 
−
** [http://www.uniprot.org/uniprot/Q06773 Q06773]
 
−
** [http://www.uniprot.org/uniprot/P52401 P52401]
 
−
** [http://www.uniprot.org/uniprot/Q02438 Q02438]
 
−
** [http://www.uniprot.org/uniprot/Q42944 Q42944]
 
−
** [http://www.uniprot.org/uniprot/P52400 P52400]
 
−
** [http://www.uniprot.org/uniprot/P52402 P52402]
 
−
** [http://www.uniprot.org/uniprot/Q9R650 Q9R650]
 
−
** [http://www.uniprot.org/uniprot/P52398 P52398]
 
−
** [http://www.uniprot.org/uniprot/P52399 P52399]
 
−
** [http://www.uniprot.org/uniprot/O50007 O50007]
 
−
** [http://www.uniprot.org/uniprot/Q43851 Q43851]
 
−
** [http://www.uniprot.org/uniprot/Q03467 Q03467]
 
−
** [http://www.uniprot.org/uniprot/Q03773 Q03773]
 
−
** [http://www.uniprot.org/uniprot/O82063 O82063]
 
−
** [http://www.uniprot.org/uniprot/O23783 O23783]
 
−
** [http://www.uniprot.org/uniprot/Q9M2M3 Q9M2M3]
 
−
** [http://www.uniprot.org/uniprot/Q9M4A9 Q9M4A9]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glucan endo-1,3-beta-d-glucosidase}}
+
{{#set: common-name=acyl-coa synthetase|long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-3.2.1.39}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN-9644

  • direction:
    • left-to-right
  • common-name:
    • acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6001, linoleate biosynthesis II (animals): PWY-6001
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5147, oleate biosynthesis I (plants): PWY-5147
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=12-OXOPHYTODIENOATE-REDUCTASE-RXN&oldid=36440"