Difference between revisions of "16S-rRNA-cytidine1402"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13322 RXN-13322] == * direction: ** left-to-right * common-name: ** 3-oxo-(11z)-eicos-11-enoyl-...")
 
(Created page with "Category:gene == Gene SJ17528 == * transcription-direction: ** negative * right-end-position: ** 15584 * left-end-position: ** 12971 * centisome-position: ** 4.9769974...")
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13322 RXN-13322] ==
+
== Gene SJ17528 ==
−
* direction:
+
* transcription-direction:
−
** left-to-right
+
** negative
−
* common-name:
+
* right-end-position:
−
** 3-oxo-(11z)-eicos-11-enoyl-coa synthase
+
** 15584
−
* ec-number:
+
* left-end-position:
−
** [http://enzyme.expasy.org/EC/2.3.1.199 ec-2.3.1.199]
+
** 12971
−
== Reaction formula ==
+
* centisome-position:
−
* 1 [[MALONYL-COA]][c] '''+''' 1 [[OLEOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-14300]][c]
+
** 4.9769974   
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[SJ19629]]
+
* [[S.japonica_carotenoid_curated]]
 +
== Reaction(s) associated ==
 +
* [[RXN-13685]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[SJ06616]]
+
* [[RXN-17897]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
== Pathway(s) ==
+
== Pathway(s) associated ==
−
* [[PWY-6433]], hydroxylated fatty acid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6433 PWY-6433]
+
* [[PWY-7230]]
−
** '''17''' reactions found over '''22''' reactions in the full pathway
+
** '''3''' reactions found over '''9''' reactions in the full pathway
−
== Reconstruction information  ==
+
{{#set: transcription-direction=negative}}
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
{{#set: right-end-position=15584}}
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: left-end-position=12971}}
−
== External links  ==
+
{{#set: centisome-position=4.9769974    }}
−
{{#set: direction=left-to-right}}
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: common-name=3-oxo-(11z)-eicos-11-enoyl-coa synthase}}
+
{{#set: nb reaction associated=2}}
−
{{#set: ec-number=ec-2.3.1.199}}
 
−
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 14:24, 26 August 2019

Gene SJ17528

  • transcription-direction:
    • negative
  • right-end-position:
    • 15584
  • left-end-position:
    • 12971
  • centisome-position:
    • 4.9769974

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7230
    • 3 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=16S-rRNA-cytidine1402&oldid=21304"