Difference between revisions of "18S-rRNA-N6-dimethyladenine1779-1780"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.4.17-RXN 3.1.4.17-RXN] == * direction: ** left-to-right * common-name: ** 3',5'-cyclic-nucleoti...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5199 RXN0-5199] == * direction: ** reversible * common-name: ** guanosine phosphorylase * ec-n...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.4.17-RXN 3.1.4.17-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5199 RXN0-5199] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3',5'-cyclic-nucleotide phosphodiesterase
+
** guanosine phosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17]
+
** [http://enzyme.expasy.org/EC/2.4.2.15 ec-2.4.2.15]
 +
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[GUANOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[GUANINE]][c] '''+''' 1 [[RIBOSE-1P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03195]]
−
* Gene: [[SJ04705]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18680]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14703]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03999]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18679]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09726]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ14526]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10845]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5532 PWY-5532]
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6620]], guanine and guanosine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6620 PWY-6620]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1296]], purine ribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1296 PWY0-1296]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14654 14654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13236 13236]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02147 R02147]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P12019 P12019]
+
{{#set: common-name=guanosine phosphorylase}}
−
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
+
{{#set: ec-number=ec-2.4.2.15|ec-2.4.2.1}}
−
** [http://www.uniprot.org/uniprot/P14099 P14099]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
+
{{#set: nb pathway associated=4}}
−
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P14100 P14100]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
 
−
** [http://www.uniprot.org/uniprot/P27815 P27815]
 
−
** [http://www.uniprot.org/uniprot/O66909 O66909]
 
−
** [http://www.uniprot.org/uniprot/P14270 P14270]
 
−
** [http://www.uniprot.org/uniprot/O27755 O27755]
 
−
** [http://www.uniprot.org/uniprot/P44685 P44685]
 
−
** [http://www.uniprot.org/uniprot/P22434 P22434]
 
−
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 
−
** [http://www.uniprot.org/uniprot/O26280 O26280]
 
−
** [http://www.uniprot.org/uniprot/O06629 O06629]
 
−
** [http://www.uniprot.org/uniprot/O30241 O30241]
 
−
** [http://www.uniprot.org/uniprot/P14644 P14644]
 
−
** [http://www.uniprot.org/uniprot/P54748 P54748]
 
−
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 
−
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 
−
** [http://www.uniprot.org/uniprot/P54827 P54827]
 
−
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 
−
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 
−
** [http://www.uniprot.org/uniprot/O60658 O60658]
 
−
** [http://www.uniprot.org/uniprot/P36599 P36599]
 
−
** [http://www.uniprot.org/uniprot/P30645 P30645]
 
−
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 
−
** [http://www.uniprot.org/uniprot/P12252 P12252]
 
−
** [http://www.uniprot.org/uniprot/P06776 P06776]
 
−
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 
−
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=3',5'-cyclic-nucleotide phosphodiesterase}}
 
−
{{#set: ec-number=ec-3.1.4.17}}
 
−
{{#set: nb gene associated=8}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN0-5199

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5532, nucleoside and nucleotide degradation (archaea): PWY-5532
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6620, guanine and guanosine salvage: PWY-6620
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-1296, purine ribonucleosides degradation: PWY0-1296
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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