Difference between revisions of "2-DEOXYRIBOSE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] == * direction: ** reversible * common-name: ** aspartate kinase...")
 
(Created page with "Category:metabolite == Metabolite 2-DEOXYRIBOSE == * common-name: ** 2'-deoxyribose * smiles: ** c(o)c(o)c(o)cc=o * inchi-key: ** asjsaqirzkanqn-uhfffaoysa-n * molecular-w...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATEKIN-RXN ASPARTATEKIN-RXN] ==
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== Metabolite 2-DEOXYRIBOSE ==
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** aspartate kinase
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** 2'-deoxyribose
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/2.7.2.4 ec-2.7.2.4]
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** c(o)c(o)c(o)cc=o
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== Reaction formula ==
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* inchi-key:
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* 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[L-BETA-ASPARTYL-P]][c]
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** asjsaqirzkanqn-uhfffaoysa-n
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ09366]]
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** 134.132
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** Category: [[orthology]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-14223]]
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* Gene: [[SJ06433]]
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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== Reaction(s) of unknown directionality ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=2'-deoxyribose}}
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* Gene: [[SJ22223]]
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{{#set: inchi-key=inchikey=asjsaqirzkanqn-uhfffaoysa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=134.132}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ10093]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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== Pathway(s) ==
 
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6559]], spermidine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6559 PWY-6559]
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[P101-PWY]], ectoine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=P101-PWY P101-PWY]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6562]], norspermidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6562 PWY-6562]
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7153]], grixazone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7153 PWY-7153]
 
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** '''4''' reactions found over '''8''' reactions in the full pathway
 
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* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23779 23779]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00480 R00480]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P08495 P08495]
 
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** [http://www.uniprot.org/uniprot/P44505 P44505]
 
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** [http://www.uniprot.org/uniprot/P27725 P27725]
 
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** [http://www.uniprot.org/uniprot/Q04795 Q04795]
 
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** [http://www.uniprot.org/uniprot/Q57991 Q57991]
 
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** [http://www.uniprot.org/uniprot/P00561 P00561]
 
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** [http://www.uniprot.org/uniprot/P00562 P00562]
 
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** [http://www.uniprot.org/uniprot/Q9PHT4 Q9PHT4]
 
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** [http://www.uniprot.org/uniprot/Q9JTN3 Q9JTN3]
 
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** [http://www.uniprot.org/uniprot/P53553 P53553]
 
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** [http://www.uniprot.org/uniprot/P10869 P10869]
 
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** [http://www.uniprot.org/uniprot/P08660 P08660]
 
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** [http://www.uniprot.org/uniprot/P26512 P26512]
 
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** [http://www.uniprot.org/uniprot/P37142 P37142]
 
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** [http://www.uniprot.org/uniprot/P41403 P41403]
 
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** [http://www.uniprot.org/uniprot/P0A4Z9 P0A4Z9]
 
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** [http://www.uniprot.org/uniprot/Q9SA18 Q9SA18]
 
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** [http://www.uniprot.org/uniprot/P49079 P49079]
 
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** [http://www.uniprot.org/uniprot/P49080 P49080]
 
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** [http://www.uniprot.org/uniprot/P93402 P93402]
 
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** [http://www.uniprot.org/uniprot/O81852 O81852]
 
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** [http://www.uniprot.org/uniprot/O63067 O63067]
 
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** [http://www.uniprot.org/uniprot/O65027 O65027]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=aspartate kinase}}
 
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{{#set: ec-number=ec-2.7.2.4}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=9}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}
 

Latest revision as of 11:18, 18 March 2021

Metabolite 2-DEOXYRIBOSE

  • common-name:
    • 2'-deoxyribose
  • smiles:
    • c(o)c(o)c(o)cc=o
  • inchi-key:
    • asjsaqirzkanqn-uhfffaoysa-n
  • molecular-weight:
    • 134.132

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2-DEOXYRIBOSE&oldid=139792"