Difference between revisions of "2-KETO-ADIPATE-DEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction TransportSeed-SULFATE == * direction: ** left-to-right == Reaction formula == * 1.0 SULFATE[e] '''=>''' 1.0 SULFATE[c] == Gene(s) ass...")
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * direction: ** reversible * common-name: ** valine transaminase * ec-number: ** [http://enzyme.expasy....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TransportSeed-SULFATE ==
+
== Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** valine transaminase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[SULFATE]][e] '''=>''' 1.0 [[SULFATE]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ17677]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04586]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[VALSYN-PWY]], L-valine biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5057]], L-valine degradation II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALDEG-PWY]], L-valine degradation I:
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR96230
−
{{#set: nb gene associated=0}}
+
* RHEA:
−
{{#set: nb pathway associated=0}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
−
{{#set: reconstruction category=manual}}
+
* LIGAND-RXN:
−
{{#set: reconstruction tool=curation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
* UNIPROT:
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
 +
** [http://www.uniprot.org/uniprot/P38891 P38891]
 +
** [http://www.uniprot.org/uniprot/P47176 P47176]
 +
** [http://www.uniprot.org/uniprot/O86505 O86505]
 +
** [http://www.uniprot.org/uniprot/O14370 O14370]
 +
** [http://www.uniprot.org/uniprot/O32954 O32954]
 +
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=valine transaminase}}
 +
{{#set: ec-number=ec-2.6.1.42}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:38, 15 March 2021

Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN

  • direction:
    • reversible
  • common-name:
    • valine transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • VALSYN-PWY, L-valine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • ALANINE-VALINESYN-PWY, L-alanine biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5057, L-valine degradation II:
    • 2 reactions found over 3 reactions in the full pathway
  • VALDEG-PWY, L-valine degradation I:
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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