Difference between revisions of "2-KETO-ADIPATE-DEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * direction: ** reversible * common-name: ** valine transaminase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction 2-KETO-ADIPATE-DEHYDROG-RXN == * direction: ** left-to-right == Reaction formula == * 1 2K-ADIPATE[c] '''+''' 1 CO-A[c] '''+''' 1 N...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN ==
+
== Reaction 2-KETO-ADIPATE-DEHYDROG-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** valine transaminase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[2K-ADIPATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[GLUTARYL-COA]][c] '''+''' 1 [[NADH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17677]]
+
* Gene: [[SJ19201]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06412]]
+
* Gene: [[SJ13629]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04586]]
+
* Gene: [[SJ06474]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALSYN-PWY]], L-valine biosynthesis:
+
* [[PWY-5652]], 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I:
+
* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway):
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5057]], L-valine degradation II:
+
* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[VALDEG-PWY]], L-valine degradation I:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR96230
+
* METANETX-RXN : MNXR94818
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30796 30796]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01933 R01933]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
 
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
 
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
 
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
 
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
 
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
 
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=valine transaminase}}
 
−
{{#set: ec-number=ec-2.6.1.42}}
 
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Latest revision as of 11:23, 18 March 2021

Reaction 2-KETO-ADIPATE-DEHYDROG-RXN

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5652, 2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY66-425, L-lysine degradation II (L-pipecolate pathway):
    • 1 reactions found over 9 reactions in the full pathway
  • LYSINE-DEG1-PWY, L-lysine degradation XI (mammalian):
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR94818
  • RHEA:
  • LIGAND-RXN:




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