Difference between revisions of "2.1.1.124-RXN"

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(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** uroporph...")
(Created page with "Category:reaction == Reaction RXN-12242 == * direction: ** left-to-right * common-name: ** 9,9'-di-cis-ζ-carotene desaturase * ec-number: ** [http://enzyme.expasy.org...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8675 ==
+
== Reaction RXN-12242 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
+
** 9,9'-di-cis-ζ-carotene desaturase
−
* synonymous:
+
* ec-number:
−
** uroporphyrinogen methyltransferase
+
** [http://enzyme.expasy.org/EC/1.3.5.6 ec-1.3.5.6]
−
** uroporphyrinogen-iii methyltransferase
 
−
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 
−
** sira
 
−
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 
−
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 
−
** uroporphyrin-iii c-methyltransferase (incorrect)
 
−
** cysg
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
+
* 1 [[CPD-7526]][c] '''+''' 2 [[ETR-Quinones]][c] '''=>''' 1 [[CPD-7496]][c] '''+''' 2 [[ETR-Quinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12313]]
+
* Gene: [[SJ05680]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05681]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
 
−
** '''2''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
 
−
** '''4''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-5196]], factor 430 biosynthesis:
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5194]], siroheme biosynthesis:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
+
{{#set: common-name=9,9'-di-cis-ζ-carotene desaturase}}
−
{{#set: synonymous=uroporphyrinogen methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|sira|adenosylmethionine-uroporphyrinogen iii methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)}}
+
{{#set: ec-number=ec-1.3.5.6}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:02, 14 January 2021

Reaction RXN-12242

  • direction:
    • left-to-right
  • common-name:
    • 9,9'-di-cis-ζ-carotene desaturase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2.1.1.124-RXN&oldid=101888"