Difference between revisions of "2.1.1.5-RXN"

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(Created page with "Category:reaction == Reaction ATPSYN-RXN == * direction: ** reversible * common-name: ** proton-transporting atp synthase activity, rotational mechanism ** proton-transpor...")
(Created page with "Category:reaction == Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN == * direction: ** left-to-right * common-name: ** deoxyribodipyrimidine photolyase * ec-number: ** [htt...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ATPSYN-RXN ==
+
== Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** proton-transporting atp synthase activity, rotational mechanism
+
** deoxyribodipyrimidine photolyase
−
** proton-transporting atpase activity, rotational mechanism
 
−
** atp synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.3.14 ec-3.6.3.14]
+
** [http://enzyme.expasy.org/EC/4.1.99.3 ec-4.1.99.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADP]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ATP]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[DNA-deoxycytidine-thymidine-dimer]][c] '''+''' 1 [[Light]][c] '''=>''' 1 [[DNA-Cytidines]][c] '''+''' 1 [[DNA-thymidines]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08112]]
−
* Gene: [[SJ12994]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01250]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13724]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16806]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ06477]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15980]]
+
* Gene: [[SJ04101]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16805]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14813]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07491]]
+
* Gene: [[SJ13192]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00836]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04098]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16239]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17407]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04783]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09429]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20855 20855]
+
* METANETX-RXN : MNXR115825
−
{{#set: direction=reversible}}
+
* LIGAND-RXN:
−
{{#set: common-name=proton-transporting atpase activity, rotational mechanism|proton-transporting atp synthase activity, rotational mechanism|atp synthase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00034 R00034]
−
{{#set: ec-number=ec-3.6.3.14}}
+
* UNIPROT:
−
{{#set: nb gene associated=16}}
+
** [http://www.uniprot.org/uniprot/P12769 P12769]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9JSP8 Q9JSP8]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q9HQ46 Q9HQ46]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/P12768 P12768]
 +
** [http://www.uniprot.org/uniprot/P27526 P27526]
 +
** [http://www.uniprot.org/uniprot/P25078 P25078]
 +
** [http://www.uniprot.org/uniprot/Q43125 Q43125]
 +
** [http://www.uniprot.org/uniprot/P40115 P40115]
 +
** [http://www.uniprot.org/uniprot/Q28811 Q28811]
 +
** [http://www.uniprot.org/uniprot/Q24443 Q24443]
 +
** [http://www.uniprot.org/uniprot/Q91186 Q91186]
 +
** [http://www.uniprot.org/uniprot/Q42696 Q42696]
 +
** [http://www.uniprot.org/uniprot/P05066 P05066]
 +
** [http://www.uniprot.org/uniprot/O24020 O24020]
 +
** [http://www.uniprot.org/uniprot/O24374 O24374]
 +
** [http://www.uniprot.org/uniprot/P00914 P00914]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=deoxyribodipyrimidine photolyase}}
 +
{{#set: ec-number=ec-4.1.99.3}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction DEOXYRIBODIPYRIMIDINE-PHOTOLYASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • deoxyribodipyrimidine photolyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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