Difference between revisions of "2.3.1.180-RXN"
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(Created page with "Category:reaction == Reaction RXN-10994 == * direction: ** reversible * common-name: ** holo-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy.org/EC/2...") |
(Created page with "Category:reaction == Reaction PROTOPORGENOXI-RXN == * direction: ** left-to-right * common-name: ** protoporphyrinogen oxidase * ec-number: ** [http://enzyme.expasy.org/EC...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction PROTOPORGENOXI-RXN == |
* direction: | * direction: | ||
− | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
− | ** | + | ** protoporphyrinogen oxidase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.3.3.4 ec-1.3.3.4] |
== Reaction formula == | == Reaction formula == | ||
− | * | + | * 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''=>''' 3 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ21798]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III: | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic): | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25577 25577] |
− | {{#set: ec-number=ec- | + | * LIGAND-RXN: |
− | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222] |
− | {{#set: nb pathway associated= | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/P50336 P50336] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49404 Q49404] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0] | ||
+ | ** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6] | ||
+ | ** [http://www.uniprot.org/uniprot/P51175 P51175] | ||
+ | ** [http://www.uniprot.org/uniprot/O24163 O24163] | ||
+ | ** [http://www.uniprot.org/uniprot/O24164 O24164] | ||
+ | ** [http://www.uniprot.org/uniprot/O64384 O64384] | ||
+ | ** [http://www.uniprot.org/uniprot/O64385 O64385] | ||
+ | {{#set: direction=left-to-right}} | ||
+ | {{#set: common-name=protoporphyrinogen oxidase}} | ||
+ | {{#set: ec-number=ec-1.3.3.4}} | ||
+ | {{#set: nb gene associated=1}} | ||
+ | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:20, 14 January 2021
Contents
Reaction PROTOPORGENOXI-RXN
- direction:
- left-to-right
- common-name:
- protoporphyrinogen oxidase
- ec-number:
Reaction formula
- 3 OXYGEN-MOLECULE[c] + 1 PROTOPORPHYRINOGEN[c] => 3 HYDROGEN-PEROXIDE[c] + 1 PROTOPORPHYRIN_IX[c]
Gene(s) associated with this reaction
- Gene: SJ21798
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
- 5 reactions found over 9 reactions in the full pathway
- PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
- 5 reactions found over 4 reactions in the full pathway
- CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
- 6 reactions found over 9 reactions in the full pathway
- HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: