Difference between revisions of "2.4.1.151-RXN"
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(Created page with "Category:reaction == Reaction RXN-11865 == * direction: ** left-to-right * common-name: ** trna (5-carboxymethylaminomethyluridine)-ribose methyltransferase * ec-number: *...") |
(Created page with "Category:reaction == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == * direction: ** reversible * common-name: ** 3-isopropylmalate dehydrogenase * synonymous: ** β-isopropylm...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 3-ISOPROPYLMALDEHYDROG-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** 3-isopropylmalate dehydrogenase |
− | * | + | * synonymous: |
− | ** | + | ** β-isopropylmalic enzyme |
+ | ** threo-ds-3-isopropylmalate dehydrogenase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ21291]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[LEUSYN-PWY]], L-leucine biosynthesis: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10895 10895] |
− | {{#set: direction= | + | * LIGAND-RXN: |
− | {{#set: common-name= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426] |
− | {{#set: | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/P05644 P05644] | ||
+ | ** [http://www.uniprot.org/uniprot/P05645 P05645] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01987 Q01987] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00412 Q00412] | ||
+ | ** [http://www.uniprot.org/uniprot/P08791 P08791] | ||
+ | ** [http://www.uniprot.org/uniprot/P30125 P30125] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0] | ||
+ | ** [http://www.uniprot.org/uniprot/O66607 O66607] | ||
+ | ** [http://www.uniprot.org/uniprot/P12010 P12010] | ||
+ | ** [http://www.uniprot.org/uniprot/P04173 P04173] | ||
+ | ** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4] | ||
+ | ** [http://www.uniprot.org/uniprot/P24098 P24098] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79] | ||
+ | ** [http://www.uniprot.org/uniprot/P43860 P43860] | ||
+ | ** [http://www.uniprot.org/uniprot/P41019 P41019] | ||
+ | ** [http://www.uniprot.org/uniprot/P54354 P54354] | ||
+ | ** [http://www.uniprot.org/uniprot/Q56268 Q56268] | ||
+ | ** [http://www.uniprot.org/uniprot/P29102 P29102] | ||
+ | ** [http://www.uniprot.org/uniprot/P37412 P37412] | ||
+ | ** [http://www.uniprot.org/uniprot/P23390 P23390] | ||
+ | ** [http://www.uniprot.org/uniprot/P29696 P29696] | ||
+ | ** [http://www.uniprot.org/uniprot/P41766 P41766] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02143 Q02143] | ||
+ | ** [http://www.uniprot.org/uniprot/P34733 P34733] | ||
+ | ** [http://www.uniprot.org/uniprot/P50180 P50180] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12591 Q12591] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12590 Q12590] | ||
+ | ** [http://www.uniprot.org/uniprot/Q12592 Q12592] | ||
+ | ** [http://www.uniprot.org/uniprot/P07139 P07139] | ||
+ | ** [http://www.uniprot.org/uniprot/P41926 P41926] | ||
+ | ** [http://www.uniprot.org/uniprot/P48012 P48012] | ||
+ | ** [http://www.uniprot.org/uniprot/P87256 P87256] | ||
+ | ** [http://www.uniprot.org/uniprot/P87257 P87257] | ||
+ | ** [http://www.uniprot.org/uniprot/P73960 P73960] | ||
+ | ** [http://www.uniprot.org/uniprot/O86504 O86504] | ||
+ | ** [http://www.uniprot.org/uniprot/O85837 O85837] | ||
+ | ** [http://www.uniprot.org/uniprot/P18869 P18869] | ||
+ | ** [http://www.uniprot.org/uniprot/P34738 P34738] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=3-isopropylmalate dehydrogenase}} | ||
+ | {{#set: synonymous=threo-ds-3-isopropylmalate dehydrogenase|β-isopropylmalic enzyme}} | ||
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:03, 5 January 2021
Contents
Reaction 3-ISOPROPYLMALDEHYDROG-RXN
- direction:
- reversible
- common-name:
- 3-isopropylmalate dehydrogenase
- synonymous:
- β-isopropylmalic enzyme
- threo-ds-3-isopropylmalate dehydrogenase
Reaction formula
- 1 2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE[c] + 1 NAD[c] <=> 1 CPD-7100[c] + 1 NADH[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ21291
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- LEUSYN-PWY, L-leucine biosynthesis:
- 5 reactions found over 6 reactions in the full pathway
- PWY-6871, 3-methylbutanol biosynthesis (engineered):
- 5 reactions found over 7 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: