Difference between revisions of "2.4.1.46-RXN"

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(Created page with "Category:reaction == Reaction RXN-13202 == * direction: ** left-to-right * common-name: ** ammonia-dependent carbamoyl-phosphate synthase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-12263 == * direction: ** left-to-right * common-name: ** farnesyl-diphosphate farnesyltransferase ** presqualene diphosphate synthase * e...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13202 ==
+
== Reaction RXN-12263 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** ammonia-dependent carbamoyl-phosphate synthase
+
** farnesyl-diphosphate farnesyltransferase
 +
** presqualene diphosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16]
+
** [http://enzyme.expasy.org/EC/2.5.1.103 ec-2.5.1.103]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17851]]
+
* Gene: [[SJ13532]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15949]]
+
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-4984]], urea cycle:
+
* [[PWY-6105]], botryococcenes and methylated squalene biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5875]], staphyloxanthin biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7072]], hopanoid biosynthesis (bacteria):
 +
** '''1''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR103264
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O15829 O15829]
+
** [http://www.uniprot.org/uniprot/O69445 O69445]
−
** [http://www.uniprot.org/uniprot/O15830 O15830]
+
** [http://www.uniprot.org/uniprot/P36596 P36596]
−
** [http://www.uniprot.org/uniprot/P07756 P07756]
+
** [http://www.uniprot.org/uniprot/O65688 O65688]
−
** [http://www.uniprot.org/uniprot/P31327 P31327]
+
** [http://www.uniprot.org/uniprot/O23118 O23118]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/O22107 O22107]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
+
** [http://www.uniprot.org/uniprot/Q40472 Q40472]
−
* RHEA:
+
** [http://www.uniprot.org/uniprot/O22106 O22106]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
+
** [http://www.uniprot.org/uniprot/P53800 P53800]
 +
** [http://www.uniprot.org/uniprot/P53799 P53799]
 +
** [http://www.uniprot.org/uniprot/P53798 P53798]
 +
** [http://www.uniprot.org/uniprot/P29704 P29704]
 +
** [http://www.uniprot.org/uniprot/Q04903 Q04903]
 +
** [http://www.uniprot.org/uniprot/Q42761 Q42761]
 +
** [http://www.uniprot.org/uniprot/Q42760 Q42760]
 +
** [http://www.uniprot.org/uniprot/P37268 P37268]
 +
** [http://www.uniprot.org/uniprot/Q02769 Q02769]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ammonia-dependent carbamoyl-phosphate synthase}}
+
{{#set: common-name=presqualene diphosphate synthase|farnesyl-diphosphate farnesyltransferase}}
−
{{#set: ec-number=ec-6.3.4.16}}
+
{{#set: ec-number=ec-2.5.1.103}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:39, 15 March 2021

Reaction RXN-12263

  • direction:
    • left-to-right
  • common-name:
    • farnesyl-diphosphate farnesyltransferase
    • presqualene diphosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6105, botryococcenes and methylated squalene biosynthesis:
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5875, staphyloxanthin biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-6767, 4,4'-diapolycopenedioate biosynthesis:
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7072, hopanoid biosynthesis (bacteria):
    • 1 reactions found over 14 reactions in the full pathway

Reconstruction information

External links





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