Difference between revisions of "2.4.1.83-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN1F-168 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.12 ec-1.14.11.12] == Reaction formula == * 1...")
(Created page with "Category:reaction == Reaction URPHOS-RXN == * direction: ** reversible * common-name: ** uridine phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN1F-168 ==
+
== Reaction URPHOS-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** uridine phosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.12 ec-1.14.11.12]
+
** [http://enzyme.expasy.org/EC/2.4.2.2 ec-2.4.2.2]
 +
** [http://enzyme.expasy.org/EC/2.4.2.3 ec-2.4.2.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-10332]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD1F-96]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c] '''<=>''' 1 [[RIBOSE-1P]][c] '''+''' 1 [[URACIL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ03195]]
−
* Gene: [[SJ07557]]
+
** Category: [[annotation]]
−
** Category: [[orthology]]
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14677]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14675]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14672]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14670]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08018]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5035]], gibberellin biosynthesis III (early C-13 hydroxylation):
+
* [[PWY0-1295]], pyrimidine ribonucleosides degradation:
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea):
 +
** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16034 16034]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24391 24391]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07184 R07184]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01876 R01876]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-1.14.11.12}}
+
** [http://www.uniprot.org/uniprot/P52624 P52624]
−
{{#set: nb gene associated=6}}
+
** [http://www.uniprot.org/uniprot/P43770 P43770]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q16831 Q16831]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P12758 P12758]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P19662 P19662]
 +
** [http://www.uniprot.org/uniprot/O08444 O08444]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=uridine phosphorylase}}
 +
{{#set: ec-number=ec-2.4.2.2|ec-2.4.2.3}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:33, 5 January 2021

Reaction URPHOS-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1295, pyrimidine ribonucleosides degradation:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5532, nucleoside and nucleotide degradation (archaea):
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=2.4.1.83-RXN&oldid=76029"