Difference between revisions of "2.7.1.160-RXN"

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(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** aspartate-trna ligase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction MALONYL-COA-ACP-TRANSACYL-RXN == * direction: ** left-to-right * common-name: ** fatty acid synthase ** malonyl-coa-acp transacylase * ec-num...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
+
== Reaction MALONYL-COA-ACP-TRANSACYL-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aspartate-trna ligase
+
** fatty acid synthase
 +
** malonyl-coa-acp transacylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22478]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03188]]
+
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ06617]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-4381]], fatty acid biosynthesis initiation (bacteria and plants):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6799]], fatty acid biosynthesis initiation (plant mitochondria):
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
+
** [http://www.uniprot.org/uniprot/P72391 P72391]
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
+
** [http://www.uniprot.org/uniprot/O34825 O34825]
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
+
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
+
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
+
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
+
** [http://www.uniprot.org/uniprot/O24916 O24916]
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
+
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
+
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
+
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
+
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
+
** [http://www.uniprot.org/uniprot/P43712 P43712]
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
+
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
+
** [http://www.uniprot.org/uniprot/O67041 O67041]
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
+
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
+
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
+
** [http://www.uniprot.org/uniprot/P63458 P63458]
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
+
** [http://www.uniprot.org/uniprot/O84241 O84241]
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
+
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
+
** [http://www.uniprot.org/uniprot/P71019 P71019]
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
+
** [http://www.uniprot.org/uniprot/P07149 P07149]
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
+
** [http://www.uniprot.org/uniprot/P73242 P73242]
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
+
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
+
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
+
** [http://www.uniprot.org/uniprot/O54437 O54437]
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
+
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
+
** [http://www.uniprot.org/uniprot/O13698 O13698]
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
+
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
+
** [http://www.uniprot.org/uniprot/O69476 O69476]
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
+
** [http://www.uniprot.org/uniprot/P12276 P12276]
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
+
** [http://www.uniprot.org/uniprot/P12785 P12785]
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
 
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aspartate-trna ligase}}
+
{{#set: common-name=fatty acid synthase|malonyl-coa-acp transacylase}}
−
{{#set: ec-number=ec-6.1.1.12}}
+
{{#set: ec-number=ec-2.3.1.39|ec-2.3.1.86|ec-2.3.1.85}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=15}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction MALONYL-COA-ACP-TRANSACYL-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-4381, fatty acid biosynthesis initiation (bacteria and plants):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6799, fatty acid biosynthesis initiation (plant mitochondria):
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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