Difference between revisions of "2.7.10.1-RXN"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction RXN-17791 == * direction: ** left-to-right * common-name: ** acetyl-coa c-acyltransferase ** 3-ketoacyl-coa thiolase * ec-number: ** [http://...") |
(Created page with "Category:reaction == Reaction 1.1.1.8-RXN == * direction: ** left-to-right * common-name: ** glycerol 3-phosphate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/E...") |
||
Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 1.1.1.8-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** glycerol 3-phosphate dehydrogenase |
− | |||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.1.1.8 ec-1.1.1.8] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[GLYCEROL-3P]][c] '''+''' 1 [[NAD]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ16475]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
− | ** Category: [[ | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | *** Source: [[ | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | + | * Gene: [[SJ00878]] | |
− | |||
− | *** Source: [[ | ||
− | |||
− | |||
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-6118]], glycerol-3-phosphate shuttle: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7411]], phosphatidate biosynthesis (yeast): | ||
+ | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00842 R00842] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P13707 P13707] | ||
+ | ** [http://www.uniprot.org/uniprot/P08507 P08507] | ||
+ | ** [http://www.uniprot.org/uniprot/O25614 O25614] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWH0 Q9JWH0] | ||
+ | ** [http://www.uniprot.org/uniprot/P43798 P43798] | ||
+ | ** [http://www.uniprot.org/uniprot/O29390 O29390] | ||
+ | ** [http://www.uniprot.org/uniprot/P46919 P46919] | ||
+ | ** [http://www.uniprot.org/uniprot/P07735 P07735] | ||
+ | ** [http://www.uniprot.org/uniprot/P13706 P13706] | ||
+ | ** [http://www.uniprot.org/uniprot/Q00055 Q00055] | ||
+ | ** [http://www.uniprot.org/uniprot/P34517 P34517] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A6S7 P0A6S7] | ||
+ | ** [http://www.uniprot.org/uniprot/P21695 P21695] | ||
+ | ** [http://www.uniprot.org/uniprot/P41911 P41911] | ||
+ | ** [http://www.uniprot.org/uniprot/P90593 P90593] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name=3- | + | {{#set: common-name=glycerol 3-phosphate dehydrogenase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-1.1.1.8}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=3}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:06, 14 January 2021
Contents
Reaction 1.1.1.8-RXN
- direction:
- left-to-right
- common-name:
- glycerol 3-phosphate dehydrogenase
- ec-number:
Reaction formula
- 1 DIHYDROXY-ACETONE-PHOSPHATE[c] + 1 NADH[c] + 1 PROTON[c] => 1 GLYCEROL-3P[c] + 1 NAD[c]
Gene(s) associated with this reaction
- Gene: SJ16475
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ00878
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6118, glycerol-3-phosphate shuttle:
- 2 reactions found over 2 reactions in the full pathway
- PWY-7385, 1,3-propanediol biosynthesis (engineered):
- 7 reactions found over 9 reactions in the full pathway
- PWY-7411, phosphatidate biosynthesis (yeast):
- 4 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- LIGAND-RXN:
- UNIPROT: